Information for 8-YYYYTMAMTTKCAAAY (Motif 5)

A G T C A G T C A G T C G A T C A C G T G T A C C G T A G T A C A C G T A C G T A C T G A G T C C G T A C G T A C G T A A G C T
Reverse Opposite:
C T G A A C G T A C G T A C G T A C T G G T A C C G T A C G T A A C T G A C G T C A T G C G T A C T A G C T A G C T A G C T A G
p-value:1e-13
log p-value:-3.147e+01
Information Content per bp:1.812
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets70.3 +/- 25.6bp
Average Position of motif in Background69.0 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.67
Offset:5
Orientation:forward strand
Alignment:YYYYTMAMTTKCAAAY
-----CGGTTTCAAA-
 A G T C A G T C A G T C G A T C A C G T G T A C C G T A G T A C A C G T A C G T A C T G A G T C C G T A C G T A C G T A A G C T
A C G T A C G T A C G T A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T

POU1F1/MA0784.1/Jaspar

Match Rank:2
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:YYYYTMAMTTKCAAAY-
---CTAATTTGCATATT
 A G T C A G T C A G T C G A T C A C G T G T A C C G T A G T A C A C G T A C G T A C T G A G T C C G T A C G T A C G T A A G C T A C G T
A C G T A C G T A C G T G A T C G C A T T G C A G C T A C A G T G C A T C G A T T C A G G T A C C T G A G A C T G C T A G C A T G C A T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.61
Offset:6
Orientation:forward strand
Alignment:YYYYTMAMTTKCAAAY
------ATATGCAAAT
 A G T C A G T C A G T C G A T C A C G T G T A C C G T A G T A C A C G T A C G T A C T G A G T C C G T A C G T A C G T A A G C T
A C G T A C G T A C G T A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

PB0145.1_Mafb_2/Jaspar

Match Rank:4
Score:0.61
Offset:5
Orientation:forward strand
Alignment:YYYYTMAMTTKCAAAY----
-----CAATTGCAAAAATAT
 A G T C A G T C A G T C G A T C A C G T G T A C C G T A G T A C A C G T A C G T A C T G A G T C C G T A C G T A C G T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:YYYYTMAMTTKCAAAY
-CATTGTTATGCAAAT
 A G T C A G T C A G T C G A T C A C G T G T A C C G T A G T A C A C G T A C G T A C T G A G T C C G T A C G T A C G T A A G C T
A C G T G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

POU2F2/MA0507.1/Jaspar

Match Rank:6
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:YYYYTMAMTTKCAAAY---
------ATATGCAAATNNN
 A G T C A G T C A G T C G A T C A C G T G T A C C G T A G T A C A C G T A C G T A C T G A G T C C G T A C G T A C G T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

PH0144.1_Pou2f2/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:YYYYTMAMTTKCAAAY--
--TNTAATTTGCATANNN
 A G T C A G T C A G T C G A T C A C G T G T A C C G T A G T A C A C G T A C G T A C T G A G T C C G T A C G T A C G T A A G C T A C G T A C G T
A C G T A C G T A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:YYYYTMAMTTKCAAAY
-CTTTGTTATGCAAAT
 A G T C A G T C A G T C G A T C A C G T G T A C C G T A G T A C A C G T A C G T A C T G A G T C C G T A C G T A C G T A A G C T
A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

Pou2f3/MA0627.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:YYYYTMAMTTKCAAAY--
--TNTAATTTGCATACNA
 A G T C A G T C A G T C G A T C A C G T G T A C C G T A G T A C A C G T A C G T A C T G A G T C C G T A C G T A C G T A A G C T A C G T A C G T
A C G T A C G T A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:YYYYTMAMTTKCAAAY--
--TNTAATTTGCATACNA
 A G T C A G T C A G T C G A T C A C G T G T A C C G T A G T A C A C G T A C G T A C T G A G T C C G T A C G T A C G T A A G C T A C G T A C G T
A C G T A C G T A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A