Information for 3-TGGACAGCDCCCN (Motif 2)

A C G T A C T G A C T G C T G A A G T C C G T A A C T G A G T C C A T G T A G C G A T C G A T C C T G A
Reverse Opposite:
G A C T C T A G C T A G A T C G G T A C C T A G A G T C A C G T C T A G A G C T A G T C A G T C T C G A
p-value:1e-477
log p-value:-1.099e+03
Information Content per bp:1.711
Number of Target Sequences with motif305.0
Percentage of Target Sequences with motif34.04%
Number of Background Sequences with motif199.5
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets49.5 +/- 15.7bp
Average Position of motif in Background49.7 +/- 34.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS2/MA0774.1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TGGACAGCDCCCN
TTGACAGC-----
 A C G T A C T G A C T G C T G A A G T C C G T A A C T G A G T C C A T G T A G C G A T C G A T C C T G A
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:TGGACAGCDCCCN
--CACAGN-----
 A C G T A C T G A C T G C T G A A G T C C G T A A C T G A G T C C A T G T A G C G A T C G A T C C T G A
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:3
Score:0.70
Offset:-9
Orientation:reverse strand
Alignment:---------TGGACAGCDCCCN
TCAGCACCATGGACAGCTCC--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C T G A A G T C C G T A A C T G A G T C C A T G T A G C G A T C G A T C C T G A
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C A C G T A C G T

REST/MA0138.2/Jaspar

Match Rank:4
Score:0.69
Offset:-10
Orientation:forward strand
Alignment:----------TGGACAGCDCCCN
TTCAGCACCATGGACAGCGCC--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C T G A A G T C C G T A A C T G A G T C C A T G T A G C G A T C G A T C C T G A
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:5
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----TGGACAGCDCCCN
GATATTGACAGCTGCGT
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C T G A A G T C C G T A A C T G A G T C C A T G T A G C G A T C G A T C C T G A
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

PH0102.1_Meis1/Jaspar

Match Rank:6
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TGGACAGCDCCCN
NTATTGACAGCTNNTT
 A C G T A C G T A C G T A C G T A C T G A C T G C T G A A G T C C G T A A C T G A G T C C A T G T A G C G A T C G A T C C T G A
C T A G A C G T C G T A C G A T A C G T A C T G C G T A A G T C C T G A A C T G A T G C G A C T T A G C A T C G G C A T G C A T

PH0170.1_Tgif2/Jaspar

Match Rank:7
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TGGACAGCDCCCN
GTATTGACAGCTNNTT
 A C G T A C G T A C G T A C G T A C T G A C T G C T G A A G T C C G T A A C T G A G T C C A T G T A G C G A T C G A T C C T G A
A C T G A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C A T G T A G C G A C T T C G A T A C G G C A T C G A T

PH0141.1_Pknox2/Jaspar

Match Rank:8
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TGGACAGCDCCCN
NNATTGACAGGTGCTT
 A C G T A C G T A C G T A C G T A C T G A C T G C T G A A G T C C G T A A C T G A G T C C A T G T A G C G A T C G A T C C T G A
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TGGACAGCDCCCN
TTGACAGG-----
 A C G T A C T G A C T G C T G A A G T C C G T A A C T G A G T C C A T G T A G C G A T C G A T C C T G A
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:10
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TGGACAGCDCCCN
GGATTGACAGGTCNTT
 A C G T A C G T A C G T A C G T A C T G A C T G C T G A A G T C C G T A A C T G A G T C C A T G T A G C G A T C G A T C C T G A
A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T