Information for 14-GAGCAGGAGAAAA (Motif 12)

A C T G C G T A A C T G A G T C C G T A A C T G A C T G C G T A A C T G C T G A C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T C G A T A G C T G T A C A C G T A G T C A G T C A C G T A C T G A G T C A C G T A G T C
p-value:1e-9
log p-value:-2.118e+01
Information Content per bp:1.935
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.0 +/- 31.5bp
Average Position of motif in Background31.7 +/- 14.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAGCAGGAGAAAA
CACAGCAGGGGG---
 A C G T A C G T A C T G C G T A A C T G A G T C C G T A A C T G A C T G C G T A A C T G C T G A C G T A C G T A C G T A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GAGCAGGAGAAAA
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A A C T G A C T G C G T A A C T G C T G A C G T A C G T A C G T A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GAGCAGGAGAAAA
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A A C T G A C T G C G T A A C T G C T G A C G T A C G T A C G T A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GAGCAGGAGAAAA
SDGCAGGTGCNS-
 A C T G C G T A A C T G A G T C C G T A A C T G A C T G C G T A A C T G C T G A C G T A C G T A C G T A
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GAGCAGGAGAAAA--
-TACTGGAAAAAAAA
 A C T G C G T A A C T G A G T C C G T A A C T G A C T G C G T A A C T G C T G A C G T A C G T A C G T A A C G T A C G T
A C G T G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GAGCAGGAGAAAA---
-ARGAGGMCAAAATGW
 A C T G C G T A A C T G A G T C C G T A A C T G A C T G C G T A A C T G C T G A C G T A C G T A C G T A A C G T A C G T A C G T
A C G T T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GAGCAGGAGAAAA
-ANCAGGATGT--
 A C T G C G T A A C T G A G T C C G T A A C T G A C T G C G T A A C T G C T G A C G T A C G T A C G T A
A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GAGCAGGAGAAAA
GAGCACAGCAGGACA---
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A G T C C G T A A C T G A C T G C G T A A C T G C T G A C G T A C G T A C G T A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T

GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAGCAGGAGAAAA-
AGATGKDGAGATAAG
 A C G T A C T G C G T A A C T G A G T C C G T A A C T G A C T G C G T A A C T G C T G A C G T A C G T A C G T A A C G T
C G T A A C T G G T C A A C G T A T C G C A G T C T A G T C A G C G T A A C T G C G T A A C G T C G T A C T G A T A C G

E2F6/MA0471.1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAGCAGGAGAAAA
GGGCGGGAAGG--
 A C T G C G T A A C T G A G T C C G T A A C T G A C T G C G T A A C T G C T G A C G T A C G T A C G T A
C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G A C G T A C G T