Information for 9-AGTGGCATAACAA (Motif 6)

C T G A A C T G A C G T C T A G A C T G A G T C C G T A A C G T C G T A C G T A A G T C C G T A C T G A
Reverse Opposite:
A G C T A C G T A C T G A C G T A C G T C G T A A C G T A C T G G T A C A G T C C G T A A G T C A G C T
p-value:1e-13
log p-value:-3.093e+01
Information Content per bp:1.927
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.0 +/- 22.4bp
Average Position of motif in Background10.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0120.1_Foxj1_2/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AGTGGCATAACAA---
-ATGTCACAACAACAC
 C T G A A C T G A C G T C T A G A C T G A G T C C G T A A C G T C G T A C G T A A G T C C G T A C T G A A C G T A C G T A C G T
A C G T C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AGTGGCATAACAA--
ATTTGCATAACAATG
 C T G A A C T G A C G T C T A G A C T G A G T C C G T A A C G T C G T A C G T A A G T C C G T A C T G A A C G T A C G T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AGTGGCATAACAA--
ATTTGCATAACAAAG
 C T G A A C T G A C G T C T A G A C T G A G T C C G T A A C G T C G T A C G T A A G T C C G T A C T G A A C G T A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

PB0121.1_Foxj3_2/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AGTGGCATAACAA----
AACACCAAAACAAAGGA
 C T G A A C T G A C G T C T A G A C T G A G T C C G T A A C G T C G T A C G T A A G T C C G T A C T G A A C G T A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGTGGCATAACAA
-VTTRCATAAY--
 C T G A A C T G A C G T C T A G A C T G A G T C C G T A A C G T C G T A C G T A A G T C C G T A C T G A
A C G T T C A G G A C T A C G T C T G A G A T C T C G A G A C T G T C A C T G A A G T C A C G T A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGTGGCATAACAA----
-ATATCAAAACAAAACA
 C T G A A C T G A C G T C T A G A C T G A G T C C G T A A C G T C G T A C G T A A G T C C G T A C T G A A C G T A C G T A C G T A C G T
A C G T G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

PB0119.1_Foxa2_2/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AGTGGCATAACAA----
--AAAAATAACAAACGG
 C T G A A C T G A C G T C T A G A C T G A G T C C G T A A C G T C G T A C G T A A G T C C G T A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

POU3F2/MA0787.1/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGTGGCATAACAA
TAATTTGCATAA---
 A C G T A C G T C T G A A C T G A C G T C T A G A C T G A G T C C G T A A C G T C G T A C G T A A G T C C G T A C T G A
C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A A C G T A C G T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGTGGCATAACAA
ATTTGCATA----
 C T G A A C T G A C G T C T A G A C T G A G T C C G T A A C G T C G T A C G T A A G T C C G T A C T G A
G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A A C G T A C G T A C G T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGTGGCATAACAA
TAATTTGCATAA---
 A C G T A C G T C T G A A C T G A C G T C T A G A C T G A G T C C G T A A C G T C G T A C G T A A G T C C G T A C T G A
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A A C G T A C G T A C G T