Information for 3-VRGGAGCTGTCCA (Motif 2)

T G C A C T A G C A T G A T C G G T C A C T A G A G T C C G A T A T C G A G C T A G T C A G T C G T C A
Reverse Opposite:
A C G T A C T G C T A G C T G A A T G C C G T A A C T G A G T C C A G T T A G C G T A C G A T C A C G T
p-value:1e-411
log p-value:-9.468e+02
Information Content per bp:1.712
Number of Target Sequences with motif285.0
Percentage of Target Sequences with motif34.42%
Number of Background Sequences with motif271.0
Percentage of Background Sequences with motif0.57%
Average Position of motif in Targets51.6 +/- 16.0bp
Average Position of motif in Background54.2 +/- 33.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0169.1_Tgif1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:VRGGAGCTGTCCA----
NNNCAGCTGTCAATATN
 T G C A C T A G C A T G A T C G G T C A C T A G A G T C C G A T A T C G A G C T A G T C A G T C G T C A A C G T A C G T A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.70
Offset:2
Orientation:forward strand
Alignment:VRGGAGCTGTCCA---------
--GGAGCTGTCCATGGTGCTGA
 T G C A C T A G C A T G A T C G G T C A C T A G A G T C C G A T A T C G A G C T A G T C A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

PH0170.1_Tgif2/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:VRGGAGCTGTCCA---
AACTAGCTGTCAATAC
 T G C A C T A G C A T G A T C G G T C A C T A G A G T C C G A T A T C G A G C T A G T C A G T C G T C A A C G T A C G T A C G T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C

PH0102.1_Meis1/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:VRGGAGCTGTCCA---
AACGAGCTGTCAATAC
 T G C A C T A G C A T G A T C G G T C A C T A G A G T C C G A T A T C G A G C T A G T C A G T C G T C A A C G T A C G T A C G T
C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.69
Offset:5
Orientation:reverse strand
Alignment:VRGGAGCTGTCCA
-----GCTGTCAA
 T G C A C T A G C A T G A T C G G T C A C T A G A G T C C G A T A T C G A G C T A G T C A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

PH0141.1_Pknox2/Jaspar

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:VRGGAGCTGTCCA---
AAGCACCTGTCAATAT
 T G C A C T A G C A T G A T C G G T C A C T A G A G T C C G A T A T C G A G C T A G T C A G T C G T C A A C G T A C G T A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

REST/MA0138.2/Jaspar

Match Rank:7
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:VRGGAGCTGTCCA----------
--GGCGCTGTCCATGGTGCTGAA
 T G C A C T A G C A T G A T C G G T C A C T A G A G T C C G A T A T C G A G C T A G T C A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.69
Offset:5
Orientation:forward strand
Alignment:VRGGAGCTGTCCA
-----GCTGTG--
 T G C A C T A G C A T G A T C G G T C A C T A G A G T C C G A T A T C G A G C T A G T C A G T C G T C A
A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T

PH0104.1_Meis2/Jaspar

Match Rank:9
Score:0.69
Offset:0
Orientation:forward strand
Alignment:VRGGAGCTGTCCA---
AAAGACCTGTCAATAC
 T G C A C T A G C A T G A T C G G T C A C T A G A G T C C G A T A T C G A G C T A G T C A G T C G T C A A C G T A C G T A C G T
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C

PH0140.1_Pknox1/Jaspar

Match Rank:10
Score:0.68
Offset:0
Orientation:forward strand
Alignment:VRGGAGCTGTCCA---
AAAGACCTGTCAATCC
 T G C A C T A G C A T G A T C G G T C A C T A G A G T C C G A T A T C G A G C T A G T C A G T C G T C A A C G T A C G T A C G T
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C