Information for 12-ATGTCCTAGTCTG (Motif 11)

C G T A A C G T A C T G A C G T A G T C A G T C A C G T C G T A A C T G A C G T G A T C A C G T A C T G
Reverse Opposite:
A G T C C G T A C A T G C G T A A G T C A C G T C G T A A C T G A C T G C G T A A G T C C G T A C G A T
p-value:1e-7
log p-value:-1.665e+01
Information Content per bp:1.928
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.5 +/- 22.0bp
Average Position of motif in Background31.0 +/- 13.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ATGTCCTAGTCTG
-TGACCTARTT--
 C G T A A C G T A C T G A C G T A G T C A G T C A C G T C G T A A C T G A C G T G A T C A C G T A C T G
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T

PB0181.1_Spdef_2/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----ATGTCCTAGTCTG
GATAACATCCTAGTAG-
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T A G T C A G T C A C G T C G T A A C T G A C G T G A T C A C G T A C T G
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G A C G T

PB0096.1_Zfp187_1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ATGTCCTAGTCTG
TTATGTACTAATAA-
 A C G T A C G T C G T A A C G T A C T G A C G T A G T C A G T C A C G T C G T A A C T G A C G T G A T C A C G T A C T G
A G C T G A C T T C G A G A C T C T A G C G A T C T G A A G T C A G C T G C T A C G T A C G A T C G T A G T C A A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ATGTCCTAGTCTG---
-TGWCCTCARNTGACC
 C G T A A C G T A C T G A C G T A G T C A G T C A C G T C G T A A C T G A C G T G A T C A C G T A C T G A C G T A C G T A C G T
A C G T G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ATGTCCTAGTCTG
BNTGDCCTTG----
 A C G T C G T A A C G T A C T G A C G T A G T C A G T C A C G T C G T A A C T G A C G T G A T C A C G T A C T G
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ATGTCCTAGTCTG-
TTGACCTANTTATN
 C G T A A C G T A C T G A C G T A G T C A G T C A C G T C G T A A C T G A C G T G A T C A C G T A C T G A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:ATGTCCTAGTCTG
-TGACCTTGAT--
 C G T A A C G T A C T G A C G T A G T C A G T C A C G T C G T A A C T G A C G T G A T C A C G T A C T G
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.57
Offset:6
Orientation:forward strand
Alignment:ATGTCCTAGTCTG-
------TWGTCTGV
 C G T A A C G T A C T G A C G T A G T C A G T C A C G T C G T A A C T G A C G T G A T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:ATGTCCTAGTCTG
-TGACCTYA----
 C G T A A C G T A C T G A C G T A G T C A G T C A C G T C G T A A C T G A C G T G A T C A C G T A C T G
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T

PB0090.1_Zbtb12_1/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---ATGTCCTAGTCTG-
CTAAGGTTCTAGATCAC
 A C G T A C G T A C G T C G T A A C G T A C T G A C G T A G T C A G T C A C G T C G T A A C T G A C G T G A T C A C G T A C T G A C G T
A T G C A C G T G C T A T C G A A C T G C T A G C G A T C G A T A G T C A G C T T C G A C T A G T C G A G C A T A G T C T G C A A G T C