Information for 9-TCGGGTTTCT (Motif 19)

A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A C G T A C G T A A G T C A G T C A G T C A C T G C G T A
p-value:1e-5
log p-value:-1.380e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.5 +/- 32.1bp
Average Position of motif in Background52.3 +/- 13.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:1
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---TCGGGTTTCT
GKMTCADRTTWC-
 A C G T A C G T A C G T A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A G T C A C G T
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TCGGGTTTCT
GKVTCADRTTWC-
 A C G T A C G T A C G T A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A G T C A C G T
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TCGGGTTTCT--
--TGGTTTCAGT
 A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A G T C A C G T A C G T A C G T
A C G T A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T

PB0034.1_Irf4_1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TCGGGTTTCT-----
TNTGGTTTCGATACN
 A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G C A T A C G T G A C T C T A G A T C G C G A T C G A T A C G T A G T C C T A G C T G A G C A T G C T A G A T C A C T G

PB0036.1_Irf6_1/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TCGGGTTTCT-----
NNNTTGGTTTCGNTNNN
 A C G T A C G T A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G C T A G T A C G C A T A C G T A G C T C T A G A C T G A C G T G C A T A C G T A G T C C T A G C T G A G A C T G A T C G C T A C A T G

TFCP2/MA0145.3/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TCGGGTTTCT
AAACCGGTTT--
 A C G T A C G T A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A G T C A C G T
C T G A C T G A C G T A A T G C G A T C C T A G A T C G G C A T G C A T A G C T A C G T A C G T

PH0165.1_Six6_1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TCGGGTTTCT-----
AATAGGGTATCAATTAT
 A C G T A C G T A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C T G A G C T A C G A T T C G A T C A G A C T G T C A G A C G T C T G A A C G T G A T C C G T A G T C A C G A T G C A T G C T A A C G T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TCGGGTTTCT----
--AGGTCTCTAACC
 A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C

PB0059.1_Six6_1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TCGGGTTTCT-----
AATAGGGTATCATATAT
 A C G T A C G T A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C T G A G C T A C G A T T C G A C T A G A C T G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C G T A C G A T G C T A G A C T

PB0035.1_Irf5_1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TCGGGTTTCT------
-NTGGTTTCGGTTNNN
 A C G T A G T C A C T G A C T G A C T G A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T G A C T C T A G A C T G A C G T G C A T A G C T A G T C C T A G C T A G G A C T G C A T G A C T G C T A C G A T