Information for 1-TCAGSACCWTGGACAG (Motif 1)

A G C T A G T C G C T A A T C G A T G C C G T A A G T C A G T C G C T A G A C T C T A G C T A G G T C A A T G C C T G A C T A G
Reverse Opposite:
G A T C A G C T T A C G A C G T A G T C A G T C C G T A C G A T T C A G A C T G A C G T T A C G A T G C C G A T T C A G T C G A
p-value:1e-958
log p-value:-2.206e+03
Information Content per bp:1.690
Number of Target Sequences with motif423.0
Percentage of Target Sequences with motif49.94%
Number of Background Sequences with motif65.3
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets51.8 +/- 10.5bp
Average Position of motif in Background46.6 +/- 34.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-TCAGSACCWTGGACAG----
TTCAGCACCATGGACAGCGCC
 A C G T A G C T A G T C G C T A A T C G A T G C C G T A A G T C A G T C G C T A G A C T C T A G C T A G G T C A A T G C C T G A C T A G A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:TCAGSACCWTGGACAG----
TCAGCACCATGGACAGCTCC
 A G C T A G T C G C T A A T C G A T G C C G T A A G T C A G T C G C T A G A C T C T A G C T A G G T C A A T G C C T G A C T A G A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.62
Offset:6
Orientation:forward strand
Alignment:TCAGSACCWTGGACAG
------CCAGGAACAG
 A G C T A G T C G C T A A T C G A T G C C G T A A G T C A G T C G C T A G A C T C T A G C T A G G T C A A T G C C T G A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.55
Offset:6
Orientation:forward strand
Alignment:TCAGSACCWTGGACAG
------CAAAGGTCAG
 A G C T A G T C G C T A A T C G A T G C C G T A A G T C A G T C G C T A G A C T C T A G C T A G G T C A A T G C C T G A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.54
Offset:9
Orientation:forward strand
Alignment:TCAGSACCWTGGACAG-
---------TTGACAGC
 A G C T A G T C G C T A A T C G A T G C C G T A A G T C A G T C G C T A G A C T C T A G C T A G G T C A A T G C C T G A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.53
Offset:7
Orientation:forward strand
Alignment:TCAGSACCWTGGACAG-
-------CAAGGHCANV
 A G C T A G T C G C T A A T C G A T G C C G T A A G T C A G T C G C T A G A C T C T A G C T A G G T C A A T G C C T G A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Esrra/MA0592.2/Jaspar

Match Rank:7
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:TCAGSACCWTGGACAG
--ATGACCTTGAA---
 A G C T A G T C G C T A A T C G A T G C C G T A A G T C A G T C G C T A G A C T C T A G C T A G G T C A A T G C C T G A C T A G
A C G T A C G T C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:8
Score:0.52
Offset:9
Orientation:forward strand
Alignment:TCAGSACCWTGGACAG-
---------TTGACAGG
 A G C T A G T C G C T A A T C G A T G C C G T A A G T C A G T C G C T A G A C T C T A G C T A G G T C A A T G C C T G A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

PB0014.1_Esrra_1/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--TCAGSACCWTGGACAG
NNNNATGACCTTGANTN-
 A C G T A C G T A G C T A G T C G C T A A T C G A T G C C G T A A G T C A G T C G C T A G A C T C T A G C T A G G T C A A T G C C T G A C T A G
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TCAGSACCWTGGACAG
---GAACAATGGN---
 A G C T A G T C G C T A A T C G A T G C C G T A A G T C A G T C G C T A G A C T C T A G C T A G G T C A A T G C C T G A C T A G
A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T