Information for 4-VNGGAGCTGTCCA (Motif 2)

T C A G C T A G C A T G A C T G G T C A C T A G A G T C A C G T T A C G C G A T A G T C A G T C C T G A
Reverse Opposite:
G A C T A C T G C T A G G C T A A T G C C G T A A C T G A G T C C A G T T G A C G T A C G A T C A G T C
p-value:1e-455
log p-value:-1.049e+03
Information Content per bp:1.712
Number of Target Sequences with motif293.0
Percentage of Target Sequences with motif34.76%
Number of Background Sequences with motif210.3
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets51.7 +/- 14.8bp
Average Position of motif in Background49.2 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:VNGGAGCTGTCCA---------
--GGAGCTGTCCATGGTGCTGA
 T C A G C T A G C A T G A C T G G T C A C T A G A G T C A C G T T A C G C G A T A G T C A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

REST/MA0138.2/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:VNGGAGCTGTCCA----------
--GGCGCTGTCCATGGTGCTGAA
 T C A G C T A G C A T G A C T G G T C A C T A G A G T C A C G T T A C G C G A T A G T C A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

PH0170.1_Tgif2/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:VNGGAGCTGTCCA---
AACTAGCTGTCAATAC
 T C A G C T A G C A T G A C T G G T C A C T A G A G T C A C G T T A C G C G A T A G T C A G T C C T G A A C G T A C G T A C G T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:VNGGAGCTGTCCA
-----GCTGTCAA
 T C A G C T A G C A T G A C T G G T C A C T A G A G T C A C G T T A C G C G A T A G T C A G T C C T G A
A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

PH0102.1_Meis1/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:VNGGAGCTGTCCA---
AACGAGCTGTCAATAC
 T C A G C T A G C A T G A C T G G T C A C T A G A G T C A C G T T A C G C G A T A G T C A G T C C T G A A C G T A C G T A C G T
C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C

PH0169.1_Tgif1/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:VNGGAGCTGTCCA----
NNNCAGCTGTCAATATN
 T C A G C T A G C A T G A C T G G T C A C T A G A G T C A C G T T A C G C G A T A G T C A G T C C T G A A C G T A C G T A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

PH0141.1_Pknox2/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:VNGGAGCTGTCCA---
AAGCACCTGTCAATAT
 T C A G C T A G C A T G A C T G G T C A C T A G A G T C A C G T T A C G C G A T A G T C A G T C C T G A A C G T A C G T A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

PH0104.1_Meis2/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:VNGGAGCTGTCCA---
AAAGACCTGTCAATAC
 T C A G C T A G C A T G A C T G G T C A C T A G A G T C A C G T T A C G C G A T A G T C A G T C C T G A A C G T A C G T A C G T
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C

PH0140.1_Pknox1/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:VNGGAGCTGTCCA---
AAAGACCTGTCAATCC
 T C A G C T A G C A T G A C T G G T C A C T A G A G T C A C G T T A C G C G A T A G T C A G T C C T G A A C G T A C G T A C G T
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.65
Offset:5
Orientation:forward strand
Alignment:VNGGAGCTGTCCA
-----GCTGTG--
 T C A G C T A G C A T G A C T G G T C A C T A G A G T C A C G T T A C G C G A T A G T C A G T C C T G A
A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T