Information for 9-TTTAATGAAT (Motif 10)

A C G T A G C T G C A T C G T A C G T A C G A T A C T G C T G A C T G A C G A T
Reverse Opposite:
C G T A A G C T A G C T A G T C C G T A G C A T A C G T C G T A C T G A C G T A
p-value:1e-8
log p-value:-1.904e+01
Information Content per bp:1.842
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif67.1
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets55.4 +/- 30.7bp
Average Position of motif in Background45.6 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---TTTAATGAAT---
ACTATGAATGAATGAT
 A C G T A C G T A C G T A C G T A G C T G C A T C G T A C G T A C G A T A C T G C T G A C T G A C G A T A C G T A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

PB0005.1_Bbx_1/Jaspar

Match Rank:2
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---TTTAATGAAT--
NANTTCATTGAATTA
 A C G T A C G T A C G T A C G T A G C T G C A T C G T A C G T A C G A T A C T G C T G A C T G A C G A T A C G T A C G T
G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A

PB0068.1_Sox1_1/Jaspar

Match Rank:3
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-TTTAATGAAT-----
NNNTATTGAATTGNNN
 A C G T A C G T A G C T G C A T C G T A C G T A C G A T A C T G C T G A C T G A C G A T A C G T A C G T A C G T A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

PB0178.1_Sox8_2/Jaspar

Match Rank:4
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--TTTAATGAAT--
NNTNTCATGAATGT
 A C G T A C G T A C G T A G C T G C A T C G T A C G T A C G A T A C T G C T G A C T G A C G A T A C G T A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

PH0095.1_Lhx5/Jaspar

Match Rank:5
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----TTTAATGAAT---
ANNATTTAATTAATTNN
 A C G T A C G T A C G T A C G T A C G T A G C T G C A T C G T A C G T A C G A T A C T G C T G A C T G A C G A T A C G T A C G T A C G T
T C G A C A T G C A G T C G T A C G A T G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G A C T C A G T G A T C A T C G

PH0101.1_Lmx1b/Jaspar

Match Rank:6
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----TTTAATGAAT---
AGTTTTTAATTAATTTG
 A C G T A C G T A C G T A C G T A C G T A G C T G C A T C G T A C G T A C G A T A C T G C T G A C T G A C G A T A C G T A C G T A C G T
T C G A C T A G C G A T C G A T G C A T A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G A T C G A T G A C T A C T G

PH0093.1_Lhx3/Jaspar

Match Rank:7
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----TTTAATGAAT---
NNTATTTAATTAATTNN
 A C G T A C G T A C G T A C G T A C G T A G C T G C A T C G T A C G T A C G A T A C T G C T G A C T G A C G A T A C G T A C G T A C G T
T G C A C A G T C A G T G C T A G C A T G A C T G A C T C T G A C G T A C G A T A G C T C T G A C T G A A G C T C A G T G C A T A T G C

PB0170.1_Sox17_2/Jaspar

Match Rank:8
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-TTTAATGAAT------
NTTNTATGAATGTGNNC
 A C G T A C G T A G C T G C A T C G T A C G T A C G A T A C T G C T G A C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PB0001.1_Arid3a_1/Jaspar

Match Rank:9
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----TTTAATGAAT---
NNNTTTTAATTAANNNN
 A C G T A C G T A C G T A C G T A C G T A G C T G C A T C G T A C G T A C G A T A C T G C T G A C T G A C G A T A C G T A C G T A C G T
C T A G C G T A C G T A C A G T G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A T G A C T A G C A T G C

PH0100.1_Lmx1a/Jaspar

Match Rank:10
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----TTTAATGAAT---
NNTTTTTAATTAATTCG
 A C G T A C G T A C G T A C G T A C G T A G C T G C A T C G T A C G T A C G A T A C T G C T G A C T G A C G A T A C G T A C G T A C G T
C T A G C T A G C G A T C G A T G C A T G A C T G A C T C G T A C G T A C G A T C G A T C T G A C T G A C G A T C G A T A T G C A T C G