Information for 11-TGCCCTTSTKTGC (Motif 6)

A C G T A C T G A G T C A G T C A G T C A C G T A C G T A T G C A G C T A C T G A G C T A C T G A G T C
Reverse Opposite:
A C T G A G T C C T G A G T A C C T G A A T C G C G T A C G T A A C T G A C T G A C T G A G T C C G T A
p-value:1e-16
log p-value:-3.690e+01
Information Content per bp:1.914
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.3 +/- 29.1bp
Average Position of motif in Background54.8 +/- 17.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TGCCCTTSTKTGC
BNTGDCCTTG-----
 A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T A T G C A G C T A C T G A G C T A C T G A G T C
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGCCCTTSTKTGC
ATGACCTTGA----
 A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T A T G C A G C T A C T G A G C T A C T G A G T C
C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGCCCTTSTKTGC
NTGACCTTGA----
 A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T A T G C A G C T A C T G A G C T A C T G A G T C
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGCCCTTSTKTGC
GTGACCTT------
 A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T A T G C A G C T A C T G A G C T A C T G A G T C
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TGCCCTTSTKTGC----
--CCATTGTATGCAAAT
 A C G T A C T G A G T C A G T C A G T C A C G T A C G T A T G C A G C T A C T G A G C T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

PB0014.1_Esrra_1/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TGCCCTTSTKTGC
NNNNATGACCTTGANTN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T A T G C A G C T A C T G A G C T A C T G A G T C
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGCCCTTSTKTGC
TGACCTTGAV---
 A C G T A C T G A G T C A G T C A G T C A C G T A C G T A T G C A G C T A C T G A G C T A C T G A G T C
G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGCCCTTSTKTGC----
-NNNNTTGTGTGCTTNN
 A C G T A C T G A G T C A G T C A G T C A C G T A C G T A T G C A G C T A C T G A G C T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGCCCTTSTKTGC
TGACCTTGAN---
 A C G T A C T G A G T C A G T C A G T C A C G T A C G T A T G C A G C T A C T G A G C T A C T G A G T C
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGCCCTTSTKTGC--
TGWCCTCARNTGACC
 A C G T A C T G A G T C A G T C A G T C A C G T A C G T A T G C A G C T A C T G A G C T A C T G A G T C A C G T A C G T
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C