Information for 10-CGHCCTCTAGTGG (Motif 5)

A G T C A C T G G A T C A G T C G T A C A G C T A T G C A C G T C T G A C T A G C G A T A C T G A C T G
Reverse Opposite:
A G T C G T A C G C T A A G T C A G C T C G T A A T C G C T G A A C T G A C T G C A T G G T A C T C A G
p-value:1e-18
log p-value:-4.179e+01
Information Content per bp:1.745
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.68%
Number of Background Sequences with motif18.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets65.5 +/- 19.6bp
Average Position of motif in Background50.1 +/- 20.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---CGHCCTCTAGTGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G T C A C T G G A T C A G T C G T A C A G C T A T G C A C G T C T G A C T A G C G A T A C T G A C T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.81
Offset:-6
Orientation:forward strand
Alignment:------CGHCCTCTAGTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G G A T C A G T C G T A C A G C T A T G C A C G T C T G A C T A G C G A T A C T G A C T G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----CGHCCTCTAGTGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A G T C A C T G G A T C A G T C G T A C A G C T A T G C A C G T C T G A C T A G C G A T A C T G A C T G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0128.1_Gcm1_2/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CGHCCTCTAGTGG--
NTCNTCCCCTATNNGNN
 A C G T A C G T A G T C A C T G G A T C A G T C G T A C A G C T A T G C A C G T C T G A C T A G C G A T A C T G A C T G A C G T A C G T
T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.60
Offset:6
Orientation:forward strand
Alignment:CGHCCTCTAGTGG-
------CTAATKGV
 A G T C A C T G G A T C A G T C G T A C A G C T A T G C A C G T C T G A C T A G C G A T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

PB0076.1_Sp4_1/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CGHCCTCTAGTGG
GGTCCCGCCCCCTTCTC-
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G G A T C A G T C G T A C A G C T A T G C A C G T C T G A C T A G C G A T A C T G A C T G
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CGHCCTCTAGTGG
NNNNTTGACCCCTNNNN-
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G G A T C A G T C G T A C A G C T A T G C A C G T C T G A C T A G C G A T A C T G A C T G
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CGHCCTCTAGTGG
TGACCYCT-----
 A G T C A C T G G A T C A G T C G T A C A G C T A T G C A C G T C T G A C T A G C G A T A C T G A C T G
A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:9
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CGHCCTCTAGTGG-
------NTAATTGN
 A G T C A C T G G A T C A G T C G T A C A G C T A T G C A C G T C T G A C T A G C G A T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C

VENTX/MA0724.1/Jaspar

Match Rank:10
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:CGHCCTCTAGTGG--
------CTAATCGNT
 A G T C A C T G G A T C A G T C G T A C A G C T A T G C A C G T C T G A C T A G C G A T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T