Information for 8-CGCCCCCTGGBGGRCA (Motif 4)

A G T C C T A G T A G C T A G C G T A C A G T C A G T C C G A T C T A G A T C G A C T G C A T G A T C G T C A G G T A C C G T A
Reverse Opposite:
G C A T C A T G A G T C T A G C G T A C T G A C T A G C G A T C G C T A T C A G C T A G C A T G A T C G A T C G G A T C T C A G
p-value:1e-17
log p-value:-4.088e+01
Information Content per bp:1.543
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif3.35%
Number of Background Sequences with motif168.0
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets55.8 +/- 21.4bp
Average Position of motif in Background51.4 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.85
Offset:-3
Orientation:reverse strand
Alignment:---CGCCCCCTGGBGGRCA
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G T C C T A G T A G C T A G C G T A C A G T C A G T C C G A T C T A G A T C G A C T G C A T G A T C G T C A G G T A C C G T A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.85
Offset:-6
Orientation:forward strand
Alignment:------CGCCCCCTGGBGGRCA
CNNBRGCGCCCCCTGSTGGC--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C T A G T A G C T A G C G T A C A G T C A G T C C G A T C T A G A T C G A C T G C A T G A T C G T C A G G T A C C G T A
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.82
Offset:-4
Orientation:forward strand
Alignment:----CGCCCCCTGGBGGRCA
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A G T C C T A G T A G C T A G C G T A C A G T C A G T C C G A T C T A G A T C G A C T G C A T G A T C G T C A G G T A C C G T A
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0101.1_Zic1_1/Jaspar

Match Rank:4
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CGCCCCCTGGBGGRCA
CACCCCCGGGGGGG--
 A G T C C T A G T A G C T A G C G T A C A G T C A G T C C G A T C T A G A T C G A C T G C A T G A T C G T C A G G T A C C G T A
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G A C G T A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:5
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CGCCCCCTGGBGGRCA
CCCCCCCGGGGGGGT-
 A G T C C T A G T A G C T A G C G T A C A G T C A G T C C G A T C T A G A T C G A C T G C A T G A T C G T C A G G T A C C G T A
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T A C G T

PB0102.1_Zic2_1/Jaspar

Match Rank:6
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CGCCCCCTGGBGGRCA
CCCCCCCGGGGGGGT-
 A G T C C T A G T A G C T A G C G T A C A G T C A G T C C G A T C T A G A T C G A C T G C A T G A T C G T C A G G T A C C G T A
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G A T C G A C T G C A T G C A T G C A T G A T C G A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:7
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CGCCCCCTGGBGGRCA
GACCCCCCGCTGTGC-
 A G T C C T A G T A G C T A G C G T A C A G T C A G T C C G A T C T A G A T C G A C T G C A T G A T C G T C A G G T A C C G T A
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CGCCCCCTGGBGGRCA
GACCCCCCGCTGCGC-
 A G T C C T A G T A G C T A G C G T A C A G T C A G T C C G A T C T A G A T C G A C T G C A T G A T C G T C A G G T A C C G T A
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CGCCCCCTGGBGGRCA
GGCCYCCTGCTGDGH-
 A G T C C T A G T A G C T A G C G T A C A G T C A G T C C G A T C T A G A T C G A C T G C A T G A T C G T C A G G T A C C G T A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CGCCCCCTGGBGGRCA
GACCCCCCGCTGTG--
 A G T C C T A G T A G C T A G C G T A C A G T C A G T C C G A T C T A G A T C G A C T G C A T G A T C G T C A G G T A C C G T A
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T A C G T