Information for 7-GGTAABCCACCCT (Motif 7)

C T A G A C T G C G A T C G T A C G T A A C T G A T G C A G T C C T G A A G T C A G T C A G T C A C G T
Reverse Opposite:
G T C A A C T G C T A G A C T G G A C T C T A G A T C G T G A C A C G T A C G T G C T A A G T C A G T C
p-value:1e-13
log p-value:-3.039e+01
Information Content per bp:1.771
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif5.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.0 +/- 22.8bp
Average Position of motif in Background37.8 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGTAABCCACCCT
GGAAATCCCC---
 C T A G A C T G C G A T C G T A C G T A A C T G A T G C A G T C C T G A A G T C A G T C A G T C A C G T
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GGTAABCCACCCT
GGAAATTCCC---
 C T A G A C T G C G A T C G T A C G T A A C T G A T G C A G T C C T G A A G T C A G T C A G T C A C G T
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGTAABCCACCCT
GGAAANCCCC---
 C T A G A C T G C G A T C G T A C G T A A C T G A T G C A G T C C T G A A G T C A G T C A G T C A C G T
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:4
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GGTAABCCACCCT
GNNAGCTAATCCCCCN-
 A C G T A C G T A C G T A C G T C T A G A C T G C G A T C G T A C G T A A C T G A T G C A G T C C T G A A G T C A G T C A G T C A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GGTAABCCACCCT
-SSAATCCACANN
 C T A G A C T G C G A T C G T A C G T A A C T G A T G C A G T C C T G A A G T C A G T C A G T C A C G T
A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

Crx/MA0467.1/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GGTAABCCACCCT
-CTAATCCTCTT-
 C T A G A C T G C G A T C G T A C G T A A C T G A T G C A G T C C T G A A G T C A G T C A G T C A C G T
A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GGTAABCCACCCT
--TAATCCCN---
 C T A G A C T G C G A T C G T A C G T A A C T G A T G C A G T C C T G A A G T C A G T C A G T C A C G T
A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GGTAABCCACCCT
GGGAAATCCCCN--
 A C G T C T A G A C T G C G A T C G T A C G T A A C T G A T G C A G T C C T G A A G T C A G T C A G T C A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GGTAABCCACCCT
GCTAATCC-----
 C T A G A C T G C G A T C G T A C G T A A C T G A T G C A G T C C T G A A G T C A G T C A G T C A C G T
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GGTAABCCACCCT
GGAAATTCCC---
 C T A G A C T G C G A T C G T A C G T A A C T G A T G C A G T C C T G A A G T C A G T C A G T C A C G T
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T