Information for 11-CCCCCAGCTGGVR (Motif 16)

A G T C A G T C A G T C A T G C A G T C C G T A A T C G A T G C A C G T A C T G A C T G T C G A C T A G
Reverse Opposite:
A G T C A C G T G T A C A G T C C G T A A T C G A T G C C G A T A C T G A T C G A C T G A C T G A C T G
p-value:1e-7
log p-value:-1.830e+01
Information Content per bp:1.830
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif15.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets62.1 +/- 23.8bp
Average Position of motif in Background41.8 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZIC1/MA0696.1/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--CCCCCAGCTGGVR
GACCCCCCGCTGTG-
 A C G T A C G T A G T C A G T C A G T C A T G C A G T C C G T A A T C G A T G C A C G T A C T G A C T G T C G A C T A G
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CCCCCAGCTGGVR
CCCCCTGCTGTG-
 A G T C A G T C A G T C A T G C A G T C C G T A A T C G A T G C A C G T A C T G A C T G T C G A C T A G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CCCCCAGCTGGVR
GGCCYCCTGCTGDGH
 A C G T A C G T A G T C A G T C A G T C A T G C A G T C C G T A A T C G A T G C A C G T A C T G A C T G T C G A C T A G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

ZIC3/MA0697.1/Jaspar

Match Rank:4
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CCCCCAGCTGGVR
GACCCCCCGCTGCGC
 A C G T A C G T A G T C A G T C A G T C A T G C A G T C C G T A A T C G A T G C A C G T A C T G A C T G T C G A C T A G
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

ZIC4/MA0751.1/Jaspar

Match Rank:5
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CCCCCAGCTGGVR
GACCCCCCGCTGTGC
 A C G T A C G T A G T C A G T C A G T C A T G C A G T C C G T A A T C G A T G C A C G T A C T G A C T G T C G A C T A G
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.73
Offset:-8
Orientation:forward strand
Alignment:--------CCCCCAGCTGGVR
CNNBRGCGCCCCCTGSTGGC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C A T G C A G T C C G T A A T C G A T G C A C G T A C T G A C T G T C G A C T A G
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CCCCCAGCTGGVR
-CAGCAGCTGN--
 A G T C A G T C A G T C A T G C A G T C C G T A A T C G A T G C A C G T A C T G A C T G T C G A C T A G
A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:8
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CCCCCAGCTGGVR
-NNVCAGCTGB--
 A G T C A G T C A G T C A T G C A G T C C G T A A T C G A T G C A C G T A C T G A C T G T C G A C T A G
A C G T C A T G T C A G T G A C G T A C G T C A T A C G T A G C G C A T T A C G A C T G A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:9
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:CCCCCAGCTGGVR
---CCAGCTGTTN
 A G T C A G T C A G T C A T G C A G T C C G T A A T C G A T G C A C G T A C T G A C T G T C G A C T A G
A C G T A C G T A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:10
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CCCCCAGCTGGVR
-NAHCAGCTGD--
 A G T C A G T C A G T C A T G C A G T C C G T A A T C G A T G C A C G T A C T G A C T G T C G A C T A G
A C G T G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T A C G T A C G T