Information for 10-GCATGTCTAA (Motif 27)

A C T G A G T C C G T A A G C T A C T G A C G T A G T C G A C T C G T A G T C A
Reverse Opposite:
A C G T C G A T C T G A C T A G C G T A G T A C C T G A A C G T A C T G G T A C
p-value:1e-7
log p-value:-1.741e+01
Information Content per bp:1.853
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif67.5
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets39.3 +/- 31.0bp
Average Position of motif in Background54.5 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)-2.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GCATGTCTAA
GCACGTAY--
 A C T G A G T C C G T A A G C T A C T G A C G T A G T C G A C T C G T A G T C A
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCATGTCTAA----
ACCGTGACTAATTNN
 A C G T A C T G A G T C C G T A A G C T A C T G A C G T A G T C G A C T C G T A G T C A A C G T A C G T A C G T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCATGTCTAA
GCACGTNC--
 A C T G A G T C C G T A A G C T A C T G A C G T A G T C G A C T C G T A G T C A
A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCATGTCTAA
BGCACGTA---
 A C G T A C T G A G T C C G T A A G C T A C T G A C G T A G T C G A C T C G T A G T C A
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T

PH0086.1_Irx5/Jaspar

Match Rank:5
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GCATGTCTAA--
AATATACATGTAAAATT
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G C T A C T G A C G T A G T C G A C T C G T A G T C A A C G T A C G T
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCATGTCTAA
GCACGTACCC
 A C T G A G T C C G T A A G C T A C T G A C G T A G T C G A C T C G T A G T C A
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCATGTCTAA--
SCHTGTTTACAT
 A C T G A G T C C G T A A G C T A C T G A C G T A G T C G A C T C G T A G T C A A C G T A C G T
T A C G T A G C G C T A C G A T C T A G A C G T C A G T C A G T G C T A A G T C G T C A G C A T

PH0085.1_Irx4/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GCATGTCTAA--
AATATACATGTAAAACA
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G C T A C T G A C G T A G T C G A C T C G T A G T C A A C G T A C G T
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCATGTCTAA
-CCTGTCAA-
 A C T G A G T C C G T A A G C T A C T G A C G T A G T C G A C T C G T A G T C A
A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T

Npas2/MA0626.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCATGTCTAA
GGCACGTGTC-
 A C G T A C T G A G T C C G T A A G C T A C T G A C G T A G T C G A C T C G T A G T C A
C T A G T A C G A G T C C G T A G T A C C T A G A C G T C T A G A C G T G T A C A C G T