Information for 5-CAATCTCCAAACC (Motif 8)

A T G C C G T A G T C A A C G T T A G C G C A T T G A C A T G C C G T A T C G A T C G A G T A C G A T C
Reverse Opposite:
C A T G A C T G A G C T A G C T A C G T A T C G A C T G C G T A A T C G G T C A A C G T A C G T A T C G
p-value:1e-13
log p-value:-3.220e+01
Information Content per bp:1.729
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets27.1 +/- 25.5bp
Average Position of motif in Background45.9 +/- 19.6bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CAATCTCCAAACC
GGCAAAAGTCCAATAA
 A C G T A C G T A C G T A T G C C G T A G T C A A C G T T A G C G C A T T G A C A T G C C G T A T C G A T C G A G T A C G A T C
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------CAATCTCCAAACC
CANAGNNCAAAGTCCA----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A G T C A A C G T T A G C G C A T T G A C A T G C C G T A T C G A T C G A G T A C G A T C
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CAATCTCCAAACC-----
-CAAATCCAGACATCACA
 A T G C C G T A G T C A A C G T T A G C G C A T T G A C A T G C C G T A T C G A T C G A G T A C G A T C A C G T A C G T A C G T A C G T A C G T
A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Hnf4a/MA0114.3/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CAATCTCCAAACC
GGGGTCAAAGTCCAAT--
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A G T C A A C G T T A G C G C A T T G A C A T G C C G T A T C G A T C G A G T A C G A T C
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CAATCTCCAAACC-
------CCAGACAG
 A T G C C G T A G T C A A C G T T A G C G C A T T G A C A T G C C G T A T C G A T C G A G T A C G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CAATCTCCAAACC---
------CCAGACRSVB
 A T G C C G T A G T C A A C G T T A G C G C A T T G A C A T G C C G T A T C G A T C G A G T A C G A T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

HNF4G/MA0484.1/Jaspar

Match Rank:7
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------CAATCTCCAAACC
AGAGTCCAAAGTCCA----
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A G T C A A C G T T A G C G C A T T G A C A T G C C G T A T C G A T C G A G T A C G A T C
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T A C G T

TBX20/MA0689.1/Jaspar

Match Rank:8
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CAATCTCCAAACC--
----CTTCACACCTA
 A T G C C G T A G T C A A C G T T A G C G C A T T G A C A T G C C G T A T C G A T C G A G T A C G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G C A T G C A T G T A C G T C A T G A C G T C A G T A C A G T C G A C T G C T A

PB0034.1_Irf4_1/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CAATCTCCAAACC---
-CGTATCGAAACCAAA
 A T G C C G T A G T C A A C G T T A G C G C A T T G A C A T G C C G T A T C G A T C G A G T A C G A T C A C G T A C G T A C G T
A C G T T G A C C T A G C G A T C G T A G A C T A G T C C T A G T C G A C G T A C G T A T A G C G A T C C T G A G T C A C G T A

PB0013.1_Eomes_1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CAATCTCCAAACC-----
-NNTTTTCACACCTTNNN
 A T G C C G T A G T C A A C G T T A G C G C A T T G A C A T G C C G T A T C G A T C G A G T A C G A T C A C G T A C G T A C G T A C G T A C G T
A C G T C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C