Information for 2-RCCACTAGRTGGC (Motif 2)

C T G A A T G C A G T C C G T A A G T C C G A T C G T A A C T G C T A G A C G T A C T G A C T G G T A C
Reverse Opposite:
C A T G A G T C A G T C G T C A A G T C A G T C A C G T G C T A A C T G A C G T A C T G A T C G A G C T
p-value:1e-20
log p-value:-4.650e+01
Information Content per bp:1.825
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.73%
Number of Background Sequences with motif68.6
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets59.2 +/- 25.0bp
Average Position of motif in Background49.7 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--RCCACTAGRTGGC-----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T C T G A A T G C A G T C C G T A A G T C C G A T C G T A A C T G C T A G A C G T A C T G A C T G G T A C A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--RCCACTAGRTGGC----
TGGCCACCAGGGGGCGCTA
 A C G T A C G T C T G A A T G C A G T C C G T A A G T C C G A T C G T A A C T G C T A G A C G T A C T G A C T G G T A C A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:RCCACTAGRTGGC-------
GCCASCAGGGGGCGCYVNNG
 C T G A A T G C A G T C C G T A A G T C C G A T C G T A A C T G C T A G A C G T A C T G A C T G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

YY1/MA0095.2/Jaspar

Match Rank:4
Score:0.63
Offset:4
Orientation:forward strand
Alignment:RCCACTAGRTGGC---
----CAAGATGGCGGC
 C T G A A T G C A G T C C G T A A G T C C G A T C G T A A C T G C T A G A C G T A C T G A C T G G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:RCCACTAGRTGGC
---AACAGATGGC
 C T G A A T G C A G T C C G T A A G T C C G A T C G T A A C T G C T A G A C G T A C T G A C T G G T A C
A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C

YY1(Zf)/Promoter/Homer

Match Rank:6
Score:0.61
Offset:4
Orientation:forward strand
Alignment:RCCACTAGRTGGC---
----CAAGATGGCGGC
 C T G A A T G C A G T C C G T A A G T C C G A T C G T A A C T G C T A G A C G T A C T G A C T G G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:RCCACTAGRTGGC
GTCACATGAY---
 C T G A A T G C A G T C C G T A A G T C C G A T C G T A A C T G C T A G A C G T A C T G A C T G G T A C
T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C A C G T A C G T A C G T

Mycn/MA0104.3/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:RCCACTAGRTGGC
GCCACGTG-----
 C T G A A T G C A G T C C G T A A G T C C G A T C G T A A C T G C T A G A C G T A C T G A C T G G T A C
C T A G A T G C A G T C C G T A A G T C C T A G A C G T A C T G A C G T A C G T A C G T A C G T A C G T

TFEC/MA0871.1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:RCCACTAGRTGGC
ATCACGTGAC---
 C T G A A T G C A G T C C G T A A G T C C G A T C G T A A C T G C T A G A C G T A C T G A C T G G T A C
T C G A C A G T G T A C C G T A A G T C T C A G G A C T A C T G T C G A A G T C A C G T A C G T A C G T

MAX::MYC/MA0059.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-RCCACTAGRTGGC
GACCACGTGGT---
 A C G T C T G A A T G C A G T C C G T A A G T C C G A T C G T A A C T G C T A G A C G T A C T G A C T G G T A C
C T A G C T G A T A C G G T A C C G T A A G T C C T A G A G C T A C T G A C T G G A C T A C G T A C G T A C G T