Information for 12-CCGCAGCGGC (Motif 38)

A T G C A T G C C A T G A G T C T G C A A C T G A G T C A C T G C T A G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C T G A G T C A C G T A C T G G T A C A T C G A T C G
p-value:1e-6
log p-value:-1.521e+01
Information Content per bp:1.862
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif26.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets30.1 +/- 15.4bp
Average Position of motif in Background43.6 +/- 39.4bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NHLH1/MA0048.2/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CCGCAGCGGC-
-CGCAGCTGCG
 A T G C A T G C C A T G A G T C T G C A A C T G A G T C A C T G C T A G A G T C A C G T
A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G

PB0003.1_Ascl2_1/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCGCAGCGGC-----
CTCAGCAGCTGCTACTG
 A C G T A C G T A T G C A T G C C A T G A G T C T G C A A C T G A G T C A C T G C T A G A G T C A C G T A C G T A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCGCAGCGGC-
NNAGCAGCTGCT
 A C G T A T G C A T G C C A T G A G T C T G C A A C T G A G T C A C T G C T A G A G T C A C G T
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCGCAGCGGC--
--NCAGCTGCTG
 A T G C A T G C C A T G A G T C T G C A A C T G A G T C A C T G C T A G A G T C A C G T A C G T
A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G

Myog/MA0500.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCGCAGCGGC-
NNGCAGCTGTC
 A T G C A T G C C A T G A G T C T G C A A C T G A G T C A C T G C T A G A G T C A C G T
A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C

Ascl2/MA0816.1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCGCAGCGGC-
-AGCAGCTGCT
 A T G C A T G C C A T G A G T C T G C A A C T G A G T C A C T G C T A G A G T C A C G T
A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCGCAGCGGC--
--GCAGCTGTNN
 A T G C A T G C C A T G A G T C T G C A A C T G A G T C A C T G C T A G A G T C A C G T A C G T
A C G T A C G T T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C T G G C A T

Tcf12/MA0521.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCGCAGCGGC-
NNGCAGCTGTT
 A T G C A T G C C A T G A G T C T G C A A C T G A G T C A C T G C T A G A G T C A C G T
A T G C G C A T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCGCAGCGGC
-CACAGN---
 A T G C A T G C C A T G A G T C T G C A A C T G A G T C A C T G C T A G A G T C
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCGCAGCGGC-
NNVVCAGCTGBN
 A C G T A T G C A T G C C A T G A G T C T G C A A C T G A G T C A C T G C T A G A G T C A C G T
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T