Information for 11-AACAAATAGBTCA (Motif 22)

C G T A C G T A A G T C C T G A C G T A C G T A A C G T G T C A A C T G A C T G A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A T A G C G T A C A C G T C G T A C G A T A C G T A G C T C T A G A C G T A C G T
p-value:1e-9
log p-value:-2.089e+01
Information Content per bp:1.846
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.7 +/- 24.6bp
Average Position of motif in Background29.1 +/- 22.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AACAAATAGBTCA
---AAYTAGGTCA
 C G T A C G T A A G T C C T G A C G T A C G T A A C G T G T C A A C T G A C T G A C G T A G T C C G T A
A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AACAAATAGBTCA-
TATAAGTAGGTCAA
 C G T A C G T A A G T C C T G A C G T A C G T A A C G T G T C A A C T G A C T G A C G T A G T C C G T A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

PB0172.1_Sox1_2/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----AACAAATAGBTCA
NNNTAACAATTATAN--
 A C G T A C G T A C G T A C G T C G T A C G T A A G T C C T G A C G T A C G T A A C G T G T C A A C T G A C T G A C G T A G T C C G T A
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G A C G T A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:4
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------AACAAATAGBTCA
NTTNAGAACAATTA-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C C T G A C G T A C G T A A C G T G T C A A C T G A C T G A C G T A G T C C G T A
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A A C G T A C G T A C G T A C G T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AACAAATAGBTCA
AACAAT-------
 C G T A C G T A A G T C C T G A C G T A C G T A A C G T G T C A A C T G A C T G A C G T A G T C C G T A
T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0175.1_Sox4_2/Jaspar

Match Rank:6
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----AACAAATAGBTCA
TNCNNAACAATTTTTNC-
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C C T G A C G T A C G T A A C G T G T C A A C T G A C T G A C G T A G T C C G T A
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C A C G T

PB0063.1_Sox13_1/Jaspar

Match Rank:7
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----AACAAATAGBTCA
TTAAGAACAATAAATT--
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C C T G A C G T A C G T A A C G T G T C A A C T G A C T G A C G T A G T C C G T A
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T A C G T A C G T

PB0165.1_Sox11_2/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----AACAAATAGBTCA
NNCNNAACAATTNT----
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C C T G A C G T A C G T A A C G T G T C A A C T G A C T G A C G T A G T C C G T A
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T A C G T A C G T A C G T A C G T

VENTX/MA0724.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AACAAATAGBTCA
ACCGATTAG----
 C G T A C G T A A G T C C T G A C G T A C G T A A C G T G T C A A C T G A C T G A C G T A G T C C G T A
C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T A C G T A C G T A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----AACAAATAGBTCA
TTTAGAACAATAAAAT--
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C C T G A C G T A C G T A A C G T G T C A A C T G A C T G A C G T A G T C C G T A
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T A C G T A C G T