Information for 6-CCAGCAGGKGGCG (Motif 6)

A G T C T A G C C G T A A T C G G T A C G C T A C T A G T C A G C A G T A T C G A T C G G T A C C A T G
Reverse Opposite:
G T A C C A T G A T G C A T G C G T C A A G T C G A T C C G A T A C T G A T G C C G A T A C T G T C A G
p-value:1e-16
log p-value:-3.871e+01
Information Content per bp:1.676
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif4.64%
Number of Background Sequences with motif363.3
Percentage of Background Sequences with motif0.77%
Average Position of motif in Targets47.5 +/- 25.9bp
Average Position of motif in Background52.1 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-CCAGCAGGKGGCG------
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C T A G C C G T A A T C G G T A C G C T A C T A G T C A G C A G T A T C G A T C G G T A C C A T G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---CCAGCAGGKGGCG---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A G T C T A G C C G T A A T C G G T A C G C T A C T A G T C A G C A G T A T C G A T C G G T A C C A T G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---CCAGCAGGKGGCG----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C T A G C C G T A A T C G G T A C G C T A C T A G T C A G C A G T A T C G A T C G G T A C C A T G A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCAGGKGGCG
DCHCAGCAGGRGGCC
 A C G T A C G T A G T C T A G C C G T A A T C G G T A C G C T A C T A G T C A G C A G T A T C G A T C G G T A C C A T G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CCAGCAGGKGGCG
CACAGCAGGGGG--
 A C G T A G T C T A G C C G T A A T C G G T A C G C T A C T A G T C A G C A G T A T C G A T C G G T A C C A T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CCAGCAGGKGGCG
-SDGCAGGTGCNS
 A G T C T A G C C G T A A T C G G T A C G C T A C T A G T C A G C A G T A T C G A T C G G T A C C A T G
A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

PB0076.1_Sp4_1/Jaspar

Match Rank:7
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CCAGCAGGKGGCG-----
-NNNAAGGGGGCGGGNNN
 A G T C T A G C C G T A A T C G G T A C G C T A C T A G T C A G C A G T A T C G A T C G G T A C C A T G A C G T A C G T A C G T A C G T A C G T
A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCAGGKGGCG
NCNCAGCGGGGGGTC
 A C G T A C G T A G T C T A G C C G T A A T C G G T A C G C T A C T A G T C A G C A G T A T C G A T C G G T A C C A T G
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCAGCAGGKGGCG
--NNCAGGTGNN-
 A G T C T A G C C G T A A T C G G T A C G C T A C T A G T C A G C A G T A T C G A T C G G T A C C A T G
A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:10
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCAGGKGGCG
NCGCAGCGGGGGGTC
 A C G T A C G T A G T C T A G C C G T A A T C G G T A C G C T A C T A G T C A G C A G T A T C G A T C G G T A C C A T G
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C