Information for 13-GACAAAGGGGATT (Motif 15)

C A T G G T C A T A G C T G C A C G T A C G T A C A T G C T A G C T A G C T A G C G T A A C G T C A G T
Reverse Opposite:
G T C A G T C A G C A T G A T C G A T C G A T C G T A C G A C T G A C T A C G T A T C G C A G T G T A C
p-value:1e-8
log p-value:-2.008e+01
Information Content per bp:1.638
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.62%
Number of Background Sequences with motif264.4
Percentage of Background Sequences with motif0.55%
Average Position of motif in Targets48.4 +/- 26.2bp
Average Position of motif in Background49.9 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GACAAAGGGGATT
AACAAAGG-----
 C A T G G T C A T A G C T G C A C G T A C G T A C A T G C T A G C T A G C T A G C G T A A C G T C A G T
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GACAAAGGGGATT
RACAAWGG-----
 C A T G G T C A T A G C T G C A C G T A C G T A C A T G C T A G C T A G C T A G C G T A A C G T C A G T
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GACAAAGGGGATT
AAAACAAAGG-----
 A C G T A C G T C A T G G T C A T A G C T G C A C G T A C G T A C A T G C T A G C T A G C T A G C G T A A C G T C A G T
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GACAAAGGGGATT
VRRACAAWGG-----
 A C G T A C G T C A T G G T C A T A G C T G C A C G T A C G T A C A T G C T A G C T A G C T A G C G T A A C G T C A G T
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:5
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GACAAAGGGGATT
GGAACAAAGR-----
 A C G T A C G T C A T G G T C A T A G C T G C A C G T A C G T A C A T G C T A G C T A G C T A G C G T A A C G T C A G T
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:6
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GACAAAGGGGATT
-ACAAAG------
 C A T G G T C A T A G C T G C A C G T A C G T A C A T G C T A G C T A G C T A G C G T A A C G T C A G T
A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:7
Score:0.69
Offset:4
Orientation:forward strand
Alignment:GACAAAGGGGATT--
----AAGAGGATTAG
 C A T G G T C A T A G C T G C A C G T A C G T A C A T G C T A G C T A G C T A G C G T A A C G T C A G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:8
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GACAAAGGGGATT
-ACAAAGGNBCCT
 C A T G G T C A T A G C T G C A C G T A C G T A C A T G C T A G C T A G C T A G C G T A A C G T C A G T
A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

PB0132.1_Hbp1_2/Jaspar

Match Rank:9
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GACAAAGGGGATT
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A C G T C A T G G T C A T A G C T G C A C G T A C G T A C A T G C T A G C T A G C T A G C G T A A C G T C A G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GACAAAGGGGATT
AAAACAATGG-----
 A C G T A C G T C A T G G T C A T A G C T G C A C G T A C G T A C A T G C T A G C T A G C T A G C G T A A C G T C A G T
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T