Information for 10-CACAGTATCA (Motif 13)

A G T C G T C A A T G C C G T A T C A G A C G T G C T A C G A T G A T C G T C A
Reverse Opposite:
C A G T C T A G G C T A C G A T T G C A A G T C C G A T T A C G C A G T T C A G
p-value:1e-8
log p-value:-1.951e+01
Information Content per bp:1.663
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif3.24%
Number of Background Sequences with motif402.5
Percentage of Background Sequences with motif0.85%
Average Position of motif in Targets53.7 +/- 29.1bp
Average Position of motif in Background51.2 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0050.1_Osr1_1/Jaspar

Match Rank:1
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CACAGTATCA---
ATTTACAGTAGCAAAA
 A C G T A C G T A C G T A G T C G T C A A T G C C G T A T C A G A C G T G C T A C G A T G A T C G T C A A C G T A C G T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

PB0051.1_Osr2_1/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CACAGTATCA---
ATGTACAGTAGCAAAG
 A C G T A C G T A C G T A G T C G T C A A T G C C G T A T C A G A C G T G C T A C G A T G A T C G T C A A C G T A C G T A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

DMRT3/MA0610.1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CACAGTATCA--
-AATGTATCAAT
 A G T C G T C A A T G C C G T A T C A G A C G T G C T A C G A T G A T C G T C A A C G T A C G T
A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CACAGTATCA
CACAGN----
 A G T C G T C A A T G C C G T A T C A G A C G T G C T A C G A T G A T C G T C A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

PB0105.1_Arid3a_2/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CACAGTATCA-----
ACCCGTATCAAATTT
 A G T C G T C A A T G C C G T A T C A G A C G T G C T A C G A T G A T C G T C A A C G T A C G T A C G T A C G T A C G T
G T C A G T A C T G A C T A G C T C A G A G C T T C G A A G C T T A G C C T G A C G T A T C G A C G A T G A C T C A G T

Sox1/MA0870.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CACAGTATCA-----
AACAATAACATTGTT
 A G T C G T C A A T G C C G T A T C A G A C G T G C T A C G A T G A T C G T C A A C G T A C G T A C G T A C G T A C G T
T G C A G C T A A G T C G T C A G T C A C G A T C G T A T C G A A T G C C G T A A C G T A G C T A C T G G A C T A G C T

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CACAGTATCA--
GAGCACAGCAGGACA
 A C G T A C G T A C G T A G T C G T C A A T G C C G T A T C A G A C G T G C T A C G A T G A T C G T C A A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PH0166.1_Six6_2/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CACAGTATCA-----
AATAGGGTATCAATATT
 A C G T A C G T A G T C G T C A A T G C C G T A T C A G A C G T G C T A C G A T G A T C G T C A A C G T A C G T A C G T A C G T A C G T
C T G A C G T A C G A T T C G A C T A G C A T G T C A G C A G T C T G A A C G T G A T C G C T A G C T A G A C T G C T A G A C T A C G T

PH0161.1_Six1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CACAGTATCA-----
GATGGGGTATCATTTTT
 A C G T A C G T A G T C G T C A A T G C C G T A T C A G A C G T G C T A C G A T G A T C G T C A A C G T A C G T A C G T A C G T A C G T
C T A G G C T A C A G T T C A G C T A G A T C G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C A G T G C A T A C G T C A G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CACAGTATCA--
--TGGTTTCAGT
 A G T C G T C A A T G C C G T A T C A G A C G T G C T A C G A T G A T C G T C A A C G T A C G T
A C G T A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T