Information for 13-GCATCACCCGCTG (Motif 13)

A C T G A G T C T C G A A C G T A G T C G T C A A G T C A G T C A G T C C T A G A G T C C G A T A T C G
Reverse Opposite:
A T G C C G T A A C T G A G T C T C A G A C T G A C T G A C G T C T A G G T C A A G C T A C T G A G T C
p-value:1e-13
log p-value:-3.124e+01
Information Content per bp:1.809
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.47%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets55.8 +/- 23.7bp
Average Position of motif in Background56.7 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GCATCACCCGCTG---
-GGCCYCCTGCTGDGH
 A C T G A G T C T C G A A C G T A G T C G T C A A G T C A G T C A G T C C T A G A G T C C G A T A T C G A C G T A C G T A C G T
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.67
Offset:6
Orientation:forward strand
Alignment:GCATCACCCGCTG---
------CCTGCTGAGH
 A C T G A G T C T C G A A C G T A G T C G T C A A G T C A G T C A G T C C T A G A G T C C G A T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCATCACCCGCTG
-SNGCACCTGCHS
 A C T G A G T C T C G A A C G T A G T C G T C A A G T C A G T C A G T C C T A G A G T C C G A T A T C G
A C G T T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GCATCACCCGCTG--
---CCCCCTGCTGTG
 A C T G A G T C T C G A A C G T A G T C G T C A A G T C A G T C A G T C C T A G A G T C C G A T A T C G A C G T A C G T
A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

ZIC3/MA0697.1/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCATCACCCGCTG---
-GACCCCCCGCTGCGC
 A C T G A G T C T C G A A C G T A G T C G T C A A G T C A G T C A G T C C T A G A G T C C G A T A T C G A C G T A C G T A C G T
A C G T A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GCATCACCCGCTG-----
---TCNCCTGCTGNGNNN
 A C T G A G T C T C G A A C G T A G T C G T C A A G T C A G T C A G T C C T A G A G T C C G A T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

ZIC4/MA0751.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCATCACCCGCTG---
-GACCCCCCGCTGTGC
 A C T G A G T C T C G A A C G T A G T C G T C A A G T C A G T C A G T C C T A G A G T C C G A T A T C G A C G T A C G T A C G T
A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCATCACCCGCTG--
-GACCCCCCGCTGTG
 A C T G A G T C T C G A A C G T A G T C G T C A A G T C A G T C A G T C C T A G A G T C C G A T A T C G A C G T A C G T
A C G T A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GCATCACCCGCTG-----
---TNTCCTGCTGTGNNG
 A C T G A G T C T C G A A C G T A G T C G T C A A G T C A G T C A G T C C T A G A G T C C G A T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCATCACCCGCTG
GCCACRCCCACY-
 A C T G A G T C T C G A A C G T A G T C G T C A A G T C A G T C A G T C C T A G A G T C C G A T A T C G
T C A G T G A C G T A C T G C A G T A C C T A G G T A C A T G C A G T C G T C A A G T C G A C T A C G T