Information for 9-GGGRTTYCCC (Motif 8)

A C T G C T A G C T A G C T G A C G A T A C G T G A T C A T G C G T A C A T G C
Reverse Opposite:
T A C G C A T G T A C G C T A G G T C A G C T A G A C T G A T C G A T C T G A C
p-value:1e-16
log p-value:-3.901e+01
Information Content per bp:1.658
Number of Target Sequences with motif53.0
Percentage of Target Sequences with motif7.01%
Number of Background Sequences with motif785.7
Percentage of Background Sequences with motif1.69%
Average Position of motif in Targets47.7 +/- 24.0bp
Average Position of motif in Background49.9 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--GGGRTTYCCC
NGGGGATTTCCC
 A C G T A C G T A C T G C T A G C T A G C T G A C G A T A C G T G A T C A T G C G T A C A T G C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-GGGRTTYCCC
GGGGATTTCC-
 A C G T A C T G C T A G C T A G C T G A C G A T A C G T G A T C A T G C G T A C A T G C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:3
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-GGGRTTYCCC-
GGGGATTCCCCC
 A C G T A C T G C T A G C T A G C T G A C G A T A C G T G A T C A T G C G T A C A T G C A C G T
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

REL/MA0101.1/Jaspar

Match Rank:4
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-GGGRTTYCCC
GGGGATTTCC-
 A C G T A C T G C T A G C T A G C T G A C G A T A C G T G A T C A T G C G T A C A T G C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-GGGRTTYCCC
GGGAATTTCC-
 A C G T A C T G C T A G C T A G C T G A C G A T A C G T G A T C A T G C G T A C A T G C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:6
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--GGGRTTYCCC-
AGGGGATTCCCCT
 A C G T A C G T A C T G C T A G C T A G C T G A C G A T A C G T G A T C A T G C G T A C A T G C A C G T
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

NFKB1/MA0105.4/Jaspar

Match Rank:7
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--GGGRTTYCCC-
AGGGGATTCCCCT
 A C G T A C G T A C T G C T A G C T A G C T G A C G A T A C G T G A T C A T G C G T A C A T G C A C G T
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GGGRTTYCCC
GGGAATTTCC-
 A C G T A C T G C T A G C T A G C T G A C G A T A C G T G A T C A T G C G T A C A T G C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T

MZF1/MA0056.1/Jaspar

Match Rank:9
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:GGGRTTYCCC-
-----TCCCCA
 A C T G C T A G C T A G C T G A C G A T A C G T G A T C A T G C G T A C A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GGGRTTYCCC
NGGGATTA---
 A C G T A C T G C T A G C T A G C T G A C G A T A C G T G A T C A T G C G T A C A T G C
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T