Information for 5-SARACCTTTGTTR (Motif 16)

A T C G C G T A C T A G G T C A A G T C A G T C A C G T A G C T A C G T A C T G A C G T A C G T C T G A
Reverse Opposite:
A G C T C G T A C G T A A G T C C G T A C T G A C G T A A C T G A C T G A C G T A G T C A C G T T A C G
p-value:1e-9
log p-value:-2.262e+01
Information Content per bp:1.889
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets73.4 +/- 24.0bp
Average Position of motif in Background66.4 +/- 17.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.80
Offset:4
Orientation:forward strand
Alignment:SARACCTTTGTTR
----CCTTTGTT-
 A T C G C G T A C T A G G T C A A G T C A G T C A C G T A G C T A C G T A C T G A C G T A C G T C T G A
A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.77
Offset:4
Orientation:forward strand
Alignment:SARACCTTTGTTR
----CCWTTGTY-
 A T C G C G T A C T A G G T C A A G T C A G T C A C G T A G C T A C G T A C T G A C G T A C G T C T G A
A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:SARACCTTTGTTR----
TNNTCCTTTGTTCTNNT
 A T C G C G T A C T A G G T C A A G T C A G T C A C G T A G C T A C G T A C T G A C G T A C G T C T G A A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:SARACCTTTGTTR----
NNNTCCTTTGTTCTNNN
 A T C G C G T A C T A G G T C A A G T C A G T C A C G T A G C T A C G T A C T G A C G T A C G T C T G A A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.75
Offset:4
Orientation:forward strand
Alignment:SARACCTTTGTTR-
----CCTTTGTTTT
 A T C G C G T A C T A G G T C A A G T C A G T C A C G T A G C T A C G T A C T G A C G T A C G T C T G A A C G T
A C G T A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.74
Offset:4
Orientation:forward strand
Alignment:SARACCTTTGTTR-
----YCTTTGTTCC
 A T C G C G T A C T A G G T C A A G T C A G T C A C G T A G C T A C G T A C T G A C G T A C G T C T G A A C G T
A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.73
Offset:4
Orientation:forward strand
Alignment:SARACCTTTGTTR-
----CCWTTGTYYB
 A T C G C G T A C T A G G T C A A G T C A G T C A C G T A G C T A C G T A C T G A C G T A C G T C T G A A C G T
A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.70
Offset:4
Orientation:forward strand
Alignment:SARACCTTTGTTR-
----CCATTGTTNY
 A T C G C G T A C T A G G T C A A G T C A G T C A C G T A G C T A C G T A C T G A C G T A C G T C T G A A C G T
A C G T A C G T A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:9
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-SARACCTTTGTTR
AGGVNCCTTTGT--
 A C G T A T C G C G T A C T A G G T C A A G T C A G T C A C G T A G C T A C G T A C T G A C G T A C G T C T G A
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.70
Offset:5
Orientation:forward strand
Alignment:SARACCTTTGTTR
-----CTTTGT--
 A T C G C G T A C T A G G T C A A G T C A G T C A C G T A G C T A C G T A C T G A C G T A C G T C T G A
A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T