Information for 5-GCACGTGACAGCT (Motif 5)

A T C G A G T C C G T A G A T C A C T G A C G T A T C G C G T A G T A C G C T A A C T G A G T C A G C T
Reverse Opposite:
T C G A A C T G T A G C C A G T A C T G C G A T A T G C G T C A A G T C C A T G A C G T A C T G A T G C
p-value:1e-18
log p-value:-4.256e+01
Information Content per bp:1.783
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.4 +/- 23.8bp
Average Position of motif in Background59.0 +/- 16.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arntl/MA0603.1/Jaspar

Match Rank:1
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GCACGTGACAGCT
NCACGTGACN---
 A T C G A G T C C G T A G A T C A C T G A C G T A T C G C G T A G T A C G C T A A C T G A G T C A G C T
C T A G G T A C C T G A A G T C T C A G C G A T A C T G G T C A A G T C G T A C A C G T A C G T A C G T

Id2/MA0617.1/Jaspar

Match Rank:2
Score:0.77
Offset:0
Orientation:forward strand
Alignment:GCACGTGACAGCT
GCACGTGA-----
 A T C G A G T C C G T A G A T C A C T G A C G T A T C G C G T A G T A C G C T A A C T G A G T C A G C T
T C A G A G T C C G T A A G T C A C T G A C G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T

HEY2/MA0649.1/Jaspar

Match Rank:3
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-GCACGTGACAGCT
GGCACGTGNC----
 A C G T A T C G A G T C C G T A G A T C A C T G A C G T A T C G C G T A G T A C G C T A A C T G A G T C A G C T
A T C G T C A G T A G C C T G A A T G C A C T G A G C T A C T G A G C T G A T C A C G T A C G T A C G T A C G T

BHLHE40/MA0464.2/Jaspar

Match Rank:4
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-GCACGTGACAGCT
ATCACGTGAC----
 A C G T A T C G A G T C C G T A G A T C A C T G A C G T A T C G C G T A G T A C G C T A A C T G A G T C A G C T
T G C A C A G T G T A C T G C A G A T C T C A G G A C T A C T G G T C A G A T C A C G T A C G T A C G T A C G T

USF1/MA0093.2/Jaspar

Match Rank:5
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GCACGTGACAGCT
GCCACGTGACC---
 A C G T A T C G A G T C C G T A G A T C A C T G A C G T A T C G C G T A G T A C G C T A A C T G A G T C A G C T
T C A G A G T C G T A C C G T A A G T C T C A G A C G T A C T G C T G A A G T C G A T C A C G T A C G T A C G T

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:6
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:GCACGTGACAGCT
-CACGTGDC----
 A T C G A G T C C G T A G A T C A C T G A C G T A T C G C G T A G T A C G C T A A C T G A G T C A G C T
A C G T G A T C C T G A A G T C C T A G G C A T C T A G C G T A G A T C A C G T A C G T A C G T A C G T

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GCACGTGACAGCT
KCACGTGMCN---
 A T C G A G T C C G T A G A T C A C T G A C G T A T C G C G T A G T A C G C T A A C T G A G T C A G C T
C A T G G T A C C G T A A G T C C T A G A C G T A C T G G T A C A G T C A G C T A C G T A C G T A C G T

Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:8
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-GCACGTGACAGCT
ACCACGTGAC----
 A C G T A T C G A G T C C G T A G A T C A C T G A C G T A T C G C G T A G T A C G C T A A C T G A G T C A G C T
T C G A G A T C A G T C C G T A A G T C T C A G A G C T A C T G T G C A A G T C A C G T A C G T A C G T A C G T

TFE3/MA0831.1/Jaspar

Match Rank:9
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GCACGTGACAGCT
ATCACGTGAC----
 A C G T A T C G A G T C C G T A G A T C A C T G A C G T A T C G C G T A G T A C G C T A A C T G A G T C A G C T
T C G A A G C T A T G C G C T A A G T C T C A G G C A T A C T G T G C A G A T C A C G T A C G T A C G T A C G T

E-box(bHLH)/Promoter/Homer

Match Rank:10
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GCACGTGACAGCT
TCACGTGACCGG-
 A T C G A G T C C G T A G A T C A C T G A C G T A T C G C G T A G T A C G C T A A C T G A G T C A G C T
A G C T A G T C C G T A A G T C T C A G C G A T A C T G T C G A A T G C T A G C T A C G T A C G A C G T