Information for 12-GTTTTATGTGCAG (Motif 5)

C T A G A C G T A C G T A C G T A G C T C G T A A C G T A C T G A C G T C T A G G T A C C G T A A C T G
Reverse Opposite:
G T A C C G A T A C T G A G T C C G T A A G T C C G T A A C G T C T G A G T C A C G T A C G T A A G T C
p-value:1e-11
log p-value:-2.646e+01
Information Content per bp:1.921
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.1 +/- 30.8bp
Average Position of motif in Background36.1 +/- 15.8bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GTTTTATGTGCAG--
NNNNTTGTGTGCTTNN
 A C G T C T A G A C G T A C G T A C G T A G C T C G T A A C G T A C T G A C G T C T A G G T A C C G T A A C T G A C G T A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

PB0104.1_Zscan4_1/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GTTTTATGTGCAG-----
-NTNTATGTGCACATNNN
 C T A G A C G T A C G T A C G T A G C T C G T A A C G T A C T G A C G T C T A G G T A C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GTTTTATGTGCAG
-TTTTATKRGG--
 C T A G A C G T A C G T A C G T A G C T C G T A A C G T A C T G A C G T C T A G G T A C C G T A A C T G
A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GTTTTATGTGCAG
NTTTTATTGG---
 C T A G A C G T A C G T A C G T A G C T C G T A A C G T A C T G A C G T C T A G G T A C C G T A A C T G
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GTTTTATGTGCAG
-TTTTATTRGN--
 C T A G A C G T A C G T A C G T A G C T C G T A A C G T A C T G A C G T C T A G G T A C C G T A A C T G
A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GTTTTATGTGCAG
NTTTTATTGG---
 C T A G A C G T A C G T A C G T A G C T C G T A A C G T A C T G A C G T C T A G G T A C C G T A A C T G
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GTTTTATGTGCAG
NNANTTTTATTGGNNN
 A C G T A C G T A C G T C T A G A C G T A C G T A C G T A G C T C G T A A C G T A C T G A C G T C T A G G T A C C G T A A C T G
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

PB0026.1_Gm397_1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GTTTTATGTGCAG-----
-NNGTATGTGCACATNNN
 C T A G A C G T A C G T A C G T A G C T C G T A A C G T A C T G A C G T C T A G G T A C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

PH0068.1_Hoxc13/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTATGTGCAG-
NAATTTTACGAGNTNN
 A C G T A C G T C T A G A C G T A C G T A C G T A G C T C G T A A C G T A C T G A C G T C T A G G T A C C G T A A C T G A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GTTTTATGTGCAG
NTTTTACGAGN--
 C T A G A C G T A C G T A C G T A G C T C G T A A C G T A C T G A C G T C T A G G T A C C G T A A C T G
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T A C G T