Information for 10-CATATGCATA (Motif 11)

A G T C C G T A G A C T G T C A A C G T A C T G A G T C G T C A G C A T C T G A
Reverse Opposite:
A G C T C G T A A C G T A C T G A G T C G T C A A C G T C T G A A C G T A C T G
p-value:1e-9
log p-value:-2.113e+01
Information Content per bp:1.854
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.28%
Number of Background Sequences with motif42.1
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets49.8 +/- 26.6bp
Average Position of motif in Background49.9 +/- 37.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-CATATGCATA
GHATATKCAT-
 A C G T A G T C C G T A G A C T G T C A A C G T A C T G A G T C G T C A G C A T C T G A
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:2
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--CATATGCATA-----
AAAATATGCATAATAAA
 A C G T A C G T A G T C C G T A G A C T G T C A A C G T A C T G A G T C G T C A G C A T C T G A A C G T A C G T A C G T A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

POU2F2/MA0507.1/Jaspar

Match Rank:3
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--CATATGCATA-
TTCATTTGCATAT
 A C G T A C G T A G T C C G T A G A C T G T C A A C G T A C T G A G T C G T C A G C A T C T G A A C G T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

Pou2f3/MA0627.1/Jaspar

Match Rank:4
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---CATATGCATA---
TNTAATTTGCATACNA
 A C G T A C G T A C G T A G T C C G T A G A C T G T C A A C G T A C T G A G T C G T C A G C A T C T G A A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:5
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---CATATGCATA---
TNTAATTTGCATACNA
 A C G T A C G T A C G T A G T C C G T A G A C T G T C A A C G T A C T G A G T C G T C A G C A T C T G A A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.75
Offset:1
Orientation:forward strand
Alignment:CATATGCATA-
-ATATGCAAAT
 A G T C C G T A G A C T G T C A A C G T A C T G A G T C G T C A G C A T C T G A A C G T
A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

PH0144.1_Pou2f2/Jaspar

Match Rank:7
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---CATATGCATA---
TNTAATTTGCATANNN
 A C G T A C G T A C G T A G T C C G T A G A C T G T C A A C G T A C T G A G T C G T C A G C A T C T G A A C G T A C G T A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

POU3F4/MA0789.1/Jaspar

Match Rank:8
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CATATGCATA
-ATTTGCATA
 A G T C C G T A G A C T G T C A A C G T A C T G A G T C G T C A G C A T C T G A
A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CATATGCATA-
-ATTTGCATAA
 A G T C C G T A G A C T G T C A A C G T A C T G A G T C G T C A G C A T C T G A A C G T
A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

Bhlha15/MA0607.1/Jaspar

Match Rank:10
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CATATGCATA
ACATATGG---
 A C G T A G T C C G T A G A C T G T C A A C G T A C T G A G T C G T C A G C A T C T G A
T C G A A G T C C G T A A C G T G T C A A C G T A C T G A T C G A C G T A C G T A C G T