Information for 3-GGBGDTTTCC (Motif 4)

T C A G A C T G A T C G T C A G C T G A A G C T A C G T G A C T T G A C G A T C
Reverse Opposite:
C T A G A C T G C T G A T G C A T C G A G A C T A G T C T A G C T G A C A G T C
p-value:1e-24
log p-value:-5.725e+01
Information Content per bp:1.632
Number of Target Sequences with motif55.0
Percentage of Target Sequences with motif6.46%
Number of Background Sequences with motif483.5
Percentage of Background Sequences with motif1.06%
Average Position of motif in Targets48.1 +/- 27.6bp
Average Position of motif in Background49.6 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.93
Offset:0
Orientation:forward strand
Alignment:GGBGDTTTCC
GGGGATTTCC
 T C A G A C T G A T C G T C A G C T G A A G C T A C G T G A C T T G A C G A T C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.89
Offset:0
Orientation:forward strand
Alignment:GGBGDTTTCC
GGGAATTTCC
 T C A G A C T G A T C G T C A G C T G A A G C T A C G T G A C T T G A C G A T C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:3
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:GGBGDTTTCC
GGGAATTTCC
 T C A G A C T G A T C G T C A G C T G A A G C T A C G T G A C T T G A C G A T C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-GGBGDTTTCC-
NGGGGATTTCCC
 A C G T T C A G A C T G A T C G T C A G C T G A A G C T A C G T G A C T T G A C G A T C A C G T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.85
Offset:0
Orientation:forward strand
Alignment:GGBGDTTTCC
GGGGATTTCC
 T C A G A C T G A T C G T C A G C T G A A G C T A C G T G A C T T G A C G A T C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:GGBGDTTTCC--
GGGGATTCCCCC
 T C A G A C T G A T C G T C A G C T G A A G C T A C G T G A C T T G A C G A T C A C G T A C G T
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

NFKB2/MA0778.1/Jaspar

Match Rank:7
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GGBGDTTTCC--
AGGGGATTCCCCT
 A C G T T C A G A C T G A T C G T C A G C T G A A G C T A C G T G A C T T G A C G A T C A C G T A C G T
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GGBGDTTTCC--
AGGGGATTCCCCT
 A C G T T C A G A C T G A T C G T C A G C T G A A G C T A C G T G A C T T G A C G A T C A C G T A C G T
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:9
Score:0.72
Offset:3
Orientation:forward strand
Alignment:GGBGDTTTCC---
---ATTTTCCATT
 T C A G A C T G A T C G T C A G C T G A A G C T A C G T G A C T T G A C G A T C A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G C A T C G A T G A C T G A C T T G A C G A T C C T G A G A C T G C A T

NFATC3/MA0625.1/Jaspar

Match Rank:10
Score:0.71
Offset:3
Orientation:forward strand
Alignment:GGBGDTTTCC---
---ATTTTCCATT
 T C A G A C T G A T C G T C A G C T G A A G C T A C G T G A C T T G A C G A T C A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A C T C G A T G C A T A G C T G T A C A T G C C T G A G A C T G C A T