Information for 12-CCAGCAGAGGGTG (Motif 13)

A T G C A G T C C G T A A T C G G T A C C G T A A C T G C G T A A C T G C T A G T A C G C G A T A C T G
Reverse Opposite:
A G T C G C T A A G T C G A T C T G A C G A C T A G T C C G A T A C T G A T G C A C G T C T A G A T C G
p-value:1e-11
log p-value:-2.727e+01
Information Content per bp:1.778
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.35%
Number of Background Sequences with motif128.3
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets56.9 +/- 23.5bp
Average Position of motif in Background46.0 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CCAGCAGAGGGTG------
GCCASCAGGGGGCGCYVNNG
 A C G T A T G C A G T C C G T A A T C G G T A C C G T A A C T G C G T A A C T G C T A G T A C G C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---CCAGCAGAGGGTG---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A T G C A G T C C G T A A T C G G T A C C G T A A C T G C G T A A C T G C T A G T A C G C G A T A C T G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CCAGCAGAGGGTG
CACAGCAGGGGG--
 A C G T A T G C A G T C C G T A A T C G G T A C C G T A A C T G C G T A A C T G C T A G T A C G C G A T A C T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CCAGCAGAGGGTG----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A T G C A G T C C G T A A T C G G T A C C G T A A C T G C G T A A C T G C T A G T A C G C G A T A C T G A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCAGAGGGTG
DCHCAGCAGGRGGCC
 A C G T A C G T A T G C A G T C C G T A A T C G G T A C C G T A A C T G C G T A A C T G C T A G T A C G C G A T A C T G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CCAGCAGAGGGTG
CACAGCGGGGGGTC
 A C G T A T G C A G T C C G T A A T C G G T A C C G T A A C T G C G T A A C T G C T A G T A C G C G A T A C T G
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

ZIC3/MA0697.1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCAGAGGGTG
NCGCAGCGGGGGGTC
 A C G T A C G T A T G C A G T C C G T A A T C G G T A C C G T A A C T G C G T A A C T G C T A G T A C G C G A T A C T G
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CCAGCAGAGGGTG
--AACAGATGGT-
 A T G C A G T C C G T A A T C G G T A C C G T A A C T G C G T A A C T G C T A G T A C G C G A T A C T G
A C G T A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCAGCAGAGGGTG
ANCAGCTG------
 A C G T A T G C A G T C C G T A A T C G G T A C C G T A A C T G C G T A A C T G C T A G T A C G C G A T A C T G
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T A C G T A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCAGCAGAGGGTG
HCAGCTGDTN---
 A T G C A G T C C G T A A T C G G T A C C G T A A C T G C G T A A C T G C T A G T A C G C G A T A C T G
G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T A C G T A C G T A C G T