Information for 25-GAGCTCAGTCTGG (Motif 39)

A C T G C G T A A C T G A G T C A C G T A G T C C G T A A C T G A C G T A G T C A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C T G C G T A A G T C A C G T A C T G C G T A A C T G A G T C A C G T A G T C
p-value:1e-5
log p-value:-1.212e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets35.8 +/- 15.2bp
Average Position of motif in Background73.2 +/- 6.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.66
Offset:5
Orientation:forward strand
Alignment:GAGCTCAGTCTGG
-----CTGTCTGG
 A C T G C G T A A C T G A G T C A C G T A G T C C G T A A C T G A C G T A G T C A C G T A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GAGCTCAGTCTGG
---VBSYGTCTGG
 A C T G C G T A A C T G A G T C A C G T A G T C C G T A A C T G A C G T A G T C A C G T A C T G A C T G
A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.59
Offset:6
Orientation:forward strand
Alignment:GAGCTCAGTCTGG---
------GGTCTGGCAT
 A C T G C G T A A C T G A G T C A C G T A G T C C G T A A C T G A C G T A G T C A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GAGCTCAGTCTGG
-----TWGTCTGV
 A C T G C G T A A C T G A G T C A C G T A G T C C G T A A C T G A C G T A G T C A C G T A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GAGCTCAGTCTGG-----
-NNTNNTGTCTGGNNTNG
 A C T G C G T A A C T G A G T C A C G T A G T C C G T A A C T G A C G T A G T C A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GAGCTCAGTCTGG
--GCTCGGSCTC-
 A C T G C G T A A C T G A G T C A C G T A G T C C G T A A C T G A C G T A G T C A C G T A C T G A C T G
A C G T A C G T C T A G G T A C A C G T A T G C C T A G A C T G T A C G A G T C A C G T A G T C A C G T

MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GAGCTCAGTCTGG-
--GCTGASTCAGCA
 A C T G C G T A A C T G A G T C A C G T A G T C C G T A A C T G A C G T A G T C A C G T A C T G A C T G A C G T
A C G T A C G T T C A G T A G C G A C T C A T G C T G A A T C G G C A T G T A C C G T A A C T G T A G C T G C A

Bach1::Mafk/MA0591.1/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GAGCTCAGTCTGG--
NTGCTGAGTCATCCN
 A C T G C G T A A C T G A G T C A C G T A G T C C G T A A C T G A C G T A G T C A C G T A C T G A C T G A C G T A C G T
T A C G G A C T A C T G A T G C G A C T A C T G G T C A A T C G C G A T G T A C C G T A A G C T A T G C T A G C A G C T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GAGCTCAGTCTGG
AGRGGTCA------
 A C G T A C T G C G T A A C T G A G T C A C G T A G T C C G T A A C T G A C G T A G T C A C G T A C T G A C T G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GAGCTCAGTCTGG---
-AGGTCACCCTGACCT
 A C T G C G T A A C T G A G T C A C G T A G T C C G T A A C T G A C G T A G T C A C G T A C T G A C T G A C G T A C G T A C G T
A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T