Information for 6-GCATATGCAT (Motif 6)

A C T G G T A C C G T A C G A T C G T A A C G T A C T G A G T C G T C A C A G T
Reverse Opposite:
G T C A A C G T A C T G G T A C C G T A C G A T C G T A A C G T A C T G A G T C
p-value:1e-9
log p-value:-2.219e+01
Information Content per bp:1.865
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif19.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets37.7 +/- 18.4bp
Average Position of motif in Background53.4 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:GCATATGCAT
GHATATKCAT
 A C T G G T A C C G T A C G A T C G T A A C G T A C T G A G T C G T C A C A G T
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:GCATATGCAT
GAATATTCAT
 A C T G G T A C C G T A C G A T C G T A A C G T A C T G A G T C G T C A C A G T
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

POU2F2/MA0507.1/Jaspar

Match Rank:3
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GCATATGCAT--
TTCATTTGCATAT
 A C G T A C T G G T A C C G T A C G A T C G T A A C G T A C T G A G T C G T C A C A G T A C G T A C G T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--GCATATGCAT---
ATGAATATTCATGAG
 A C G T A C G T A C T G G T A C C G T A C G A T C G T A A C G T A C T G A G T C G T C A C A G T A C G T A C G T A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:5
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----GCATATGCAT-
AYATGYATATGCATR
 A C G T A C G T A C G T A C G T A C T G G T A C C G T A C G A T C G T A A C G T A C T G A G T C G T C A C A G T A C G T
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G

Bhlha15/MA0607.1/Jaspar

Match Rank:6
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GCATATGCAT
ACATATGG--
 A C T G G T A C C G T A C G A T C G T A A C G T A C T G A G T C G T C A C A G T
T C G A A G T C C G T A A C G T G T C A A C G T A C T G A T C G A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:7
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GCATATGCAT----
TNTAATTTGCATACNA
 A C G T A C G T A C T G G T A C C G T A C G A T C G T A A C G T A C T G A G T C G T C A C A G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GCATATGCAT----
TNTAATTTGCATACNA
 A C G T A C G T A C T G G T A C C G T A C G A T C G T A A C G T A C T G A G T C G T C A C A G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.71
Offset:2
Orientation:forward strand
Alignment:GCATATGCAT--
--ATTTGCATAA
 A C T G G T A C C G T A C G A T C G T A A C G T A C T G A G T C G T C A C A G T A C G T A C G T
A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:GCATATGCAT--
--ATTTGCATAT
 A C T G G T A C C G T A C G A T C G T A A C G T A C T G A G T C G T C A C A G T A C G T A C G T
A C G T A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T