Information for 4-WTGCATATGCAAW (Motif 5)

G C T A A C G T C T A G G T A C C G T A G C A T C G T A A C G T C A T G G A T C C G T A G C T A G C T A
Reverse Opposite:
C G A T C G A T C G A T C T A G G T A C C G T A A C G T C G T A A C G T A C T G A G T C C G T A C G A T
p-value:1e-16
log p-value:-3.857e+01
Information Content per bp:1.730
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.04%
Number of Background Sequences with motif51.4
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets52.6 +/- 21.6bp
Average Position of motif in Background51.1 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-WTGCATATGCAAW-
YATGCATATRCATRT
 A C G T G C T A A C G T C T A G G T A C C G T A G C A T C G T A A C G T C A T G G A T C C G T A G C T A G C T A A C G T
G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.82
Offset:0
Orientation:forward strand
Alignment:WTGCATATGCAAW
ATGMATATDC---
 G C T A A C G T C T A G G T A C C G T A G C A T C G T A A C G T C A T G G A T C C G T A G C T A G C T A
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:3
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--WTGCATATGCAAW
ATATGCAAATNNN--
 A C G T A C G T G C T A A C G T C T A G G T A C C G T A G C A T C G T A A C G T C A T G G A T C C G T A G C T A G C T A
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---WTGCATATGCAAW
CTCATGAATATTCAT-
 A C G T A C G T A C G T G C T A A C G T C T A G G T A C C G T A G C A T C G T A A C G T C A T G G A T C C G T A G C T A G C T A
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:5
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----WTGCATATGCAAW
TTGTATGCAAATTAGA-
 A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C C G T A G C A T C G T A A C G T C A T G G A T C C G T A G C T A G C T A
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:6
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----WTGCATATGCAAW
TTGTATGCAAATTAGA-
 A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C C G T A G C A T C G T A A C G T C A T G G A T C C G T A G C T A G C T A
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:7
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----WTGCATATGCAAW
TTGTATGCAAATTAGA-
 A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C C G T A G C A T C G T A A C G T C A T G G A T C C G T A G C T A G C T A
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--WTGCATATGCAAW
TTATGCAAAT-----
 A C G T A C G T G C T A A C G T C T A G G T A C C G T A G C A T C G T A A C G T C A T G G A T C C G T A G C T A G C T A
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--WTGCATATGCAAW
ATATGCAAAT-----
 A C G T A C G T G C T A A C G T C T A G G T A C C G T A G C A T C G T A A C G T C A T G G A T C C G T A G C T A G C T A
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.74
Offset:0
Orientation:forward strand
Alignment:WTGCATATGCAAW
ATGAATATTC---
 G C T A A C G T C T A G G T A C C G T A G C A T C G T A A C G T C A T G G A T C C G T A G C T A G C T A
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T