Information for 17-CCTRGTGRKKAGA (Motif 24)

A G T C A G T C A C G T C T A G A C T G A C G T A C T G C T A G A C G T A C T G C G T A C T A G C G T A
Reverse Opposite:
A C G T A G T C C G A T G T A C T G C A A G T C A G T C C G T A A G T C A G T C C G T A A C T G A C T G
p-value:1e-9
log p-value:-2.231e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.5 +/- 26.2bp
Average Position of motif in Background48.1 +/- 12.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCTRGTGRKKAGA
CCCCCTGCTGTG----
 A C G T A C G T A C G T A G T C A G T C A C G T C T A G A C T G A C G T A C T G C T A G A C G T A C T G C G T A C T A G C G T A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.57
Offset:-8
Orientation:reverse strand
Alignment:--------CCTRGTGRKKAGA
TAGCGCCCCCTGGTGGCCA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T C T A G A C T G A C G T A C T G C T A G A C G T A C T G C G T A C T A G C G T A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T A C G T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CCTRGTGRKKAGA---
----GTGGCGTGACNG
 A G T C A G T C A C G T C T A G A C T G A C G T A C T G C T A G A C G T A C T G C G T A C T A G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.56
Offset:-9
Orientation:forward strand
Alignment:---------CCTRGTGRKKAGA
ANAGTGCCACCTGGTGGCCA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T C T A G A C T G A C G T A C T G C T A G A C G T A C T G C G T A C T A G C G T A
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCTRGTGRKKAGA
TNTCCTGCTGTGNNG-
 A C G T A C G T A C G T A G T C A G T C A C G T C T A G A C T G A C G T A C T G C T A G A C G T A C T G C G T A C T A G C G T A
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T

SREBF1/MA0595.1/Jaspar

Match Rank:6
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CCTRGTGRKKAGA-
----GTGGGGTGAT
 A G T C A G T C A C G T C T A G A C T G A C G T A C T G C T A G A C G T A C T G C G T A C T A G C G T A A C G T
A C G T A C G T A C G T A C G T T C A G A C G T A T C G C T A G A T C G A T C G A C G T A C T G C G T A A G C T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CCTRGTGRKKAGA--
---GGTGYTGACAGS
 A G T C A G T C A C G T C T A G A C T G A C G T A C T G C T A G A C G T A C T G C G T A C T A G C G T A A C G T A C G T
A C G T A C G T A C G T T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CCTRGTGRKKAGA-
----ATGGGGTGAT
 A G T C A G T C A C G T C T A G A C T G A C G T A C T G C T A G A C G T A C T G C G T A C T A G C G T A A C G T
A C G T A C G T A C G T A C G T T C G A A G C T C A T G A C T G A T C G T A C G G A C T A T C G C G T A A G C T

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CCTRGTGRKKAGA
TCNCCTGCTGNGNNN-
 A C G T A C G T A C G T A G T C A G T C A C G T C T A G A C T G A C G T A C T G C T A G A C G T A C T G C G T A C T A G C G T A
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T

SREBF2/MA0596.1/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CCTRGTGRKKAGA-
----ATGGGGTGAT
 A G T C A G T C A C G T C T A G A C T G A C G T A C T G C T A G A C G T A C T G C G T A C T A G C G T A A C G T
A C G T A C G T A C G T A C G T T C G A A C G T A T C G C T A G A T C G T A C G A C G T A C T G C G T A A G C T