Information for 4-GCGCGGAGCCACT (Motif 5)

A C T G G T A C C T A G A G T C T A C G T C A G C G T A A C T G A G T C A G T C C G T A G T A C A G C T
Reverse Opposite:
C T G A A C T G A C G T A C T G A C T G A G T C A C G T A G T C A G T C A C T G A G T C A C T G A G T C
p-value:1e-13
log p-value:-3.219e+01
Information Content per bp:1.860
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.0 +/- 18.8bp
Average Position of motif in Background75.0 +/- 17.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GCGCGGAGCCACT
---CGGAGC----
 A C T G G T A C C T A G A G T C T A C G T C A G C G T A A C T G A G T C A G T C C G T A G T A C A G C T
A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCGCGGAGCCACT
TGGCACCATGCCAA-
 A C G T A C G T A C T G G T A C C T A G A G T C T A C G T C A G C G T A A C T G A G T C A G T C C G T A G T A C A G C T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCGCGGAGCCACT
RGKGGGCGGAGC----
 A C G T A C G T A C G T A C T G G T A C C T A G A G T C T A C G T C A G C G T A A C T G A G T C A G T C C G T A G T A C A G C T
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCGCGGAGCCACT---
AGCTCGGCGCCAAAAGC
 A C G T A C T G G T A C C T A G A G T C T A C G T C A G C G T A A C T G A G T C A G T C C G T A G T A C A G C T A C G T A C G T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

Sp1(Zf)/Promoter/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCGCGGAGCCACT
GGGGGCGGGGCC---
 A C G T A C G T A C T G G T A C C T A G A G T C T A C G T C A G C G T A A C T G A G T C A G T C C G T A G T A C A G C T
T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C A C G T A C G T A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCGCGGAGCCACT---
CCTTCGGCGCCAAAAGG
 A C G T A C T G G T A C C T A G A G T C T A C G T C A G C G T A A C T G A G T C A G T C C G T A G T A C A G C T A C G T A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GCGCGGAGCCACT--
---ACTAGCCAATCA
 A C T G G T A C C T A G A G T C T A C G T C A G C G T A A C T G A G T C A G T C C G T A G T A C A G C T A C G T A C G T
A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GCGCGGAGCCACT
----CGTGCCAAG
 A C T G G T A C C T A G A G T C T A C G T C A G C G T A A C T G A G T C A G T C C G T A G T A C A G C T
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCGCGGAGCCACT
CTTGGCANNNTGCCAA-
 A C G T A C G T A C G T A C G T A C T G G T A C C T A G A G T C T A C G T C A G C G T A A C T G A G T C A G T C C G T A G T A C A G C T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:GCGCGGAGCCACT
------TGCCAA-
 A C T G G T A C C T A G A G T C T A C G T C A G C G T A A C T G A G T C A G T C C G T A G T A C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T