Information for 9-GTTTTAGCAC (Motif 18)

A T C G A C G T A C G T A C G T A C G T C T G A C T A G G A T C C G T A A T G C
Reverse Opposite:
A T C G A C G T C T A G A G T C G A C T C G T A G T C A C G T A G T C A A T G C
p-value:1e-8
log p-value:-2.020e+01
Information Content per bp:1.854
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.54%
Number of Background Sequences with motif63.3
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets52.9 +/- 29.7bp
Average Position of motif in Background54.4 +/- 34.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0047.1_Hoxa11/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTAGCAC----
NNGTTTTACGACTTTA
 A C G T A C G T A T C G A C G T A C G T A C G T A C G T C T G A C T A G G A T C C G T A A T G C A C G T A C G T A C G T A C G T
G T C A G A C T C T A G C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C G T A

PH0065.1_Hoxc10/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTAGCAC----
ANNTTTTACGACNTNN
 A C G T A C G T A T C G A C G T A C G T A C G T A C G T C T G A C T A G G A T C C G T A A T G C A C G T A C G T A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

HOXC12/MA0906.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GTTTTAGCAC-
NTTTTACGACC
 A T C G A C G T A C G T A C G T A C G T C T G A C T A G G A T C C G T A A T G C A C G T
C G A T C A G T C G A T G C A T C G A T T C G A A G T C C A T G C T G A A G T C G A T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GTTTTAGCAC
NTTTTATGAC
 A T C G A C G T A C G T A C G T A C G T C T G A C T A G G A T C C G T A A T G C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GTTTTAGCAC-
-NNTTGGCANN
 A T C G A C G T A C G T A C G T A C G T C T G A C T A G G A T C C G T A A T G C A C G T
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

HOXD12/MA0873.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTTTTAGCAC-
NTTTTACGACT
 A T C G A C G T A C G T A C G T A C G T C T G A C T A G G A T C C G T A A T G C A C G T
C A G T C G A T G C A T A G C T G C A T C T G A A G T C A T C G T C G A A G T C A G C T

PH0066.1_Hoxc11/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTAGCAC----
NNNTTTTACGACNTTN
 A C G T A C G T A T C G A C G T A C G T A C G T A C G T C T G A C T A G G A T C C G T A A T G C A C G T A C G T A C G T A C G T
G T A C G A C T C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C T G A

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:8
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GTTTTAGCAC--
--ATTAACACCT
 A T C G A C G T A C G T A C G T A C G T C T G A C T A G G A T C C G T A A T G C A C G T A C G T
A C G T A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GTTTTAGCAC---
---TTMACACCTT
 A T C G A C G T A C G T A C G T A C G T C T G A C T A G G A T C C G T A A T G C A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

HOXD11/MA0908.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GTTTTAGCAC
NTTTTACGAC
 A T C G A C G T A C G T A C G T A C G T C T G A C T A G G A T C C G T A A T G C
C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C