Information for 12-CATGGCAACG (Motif 28)

G A T C C T G A G A C T T A C G C A T G T G A C T C G A G T C A G A T C A C T G
Reverse Opposite:
T G A C C T A G C A G T A G C T A C T G G T A C A T G C C G T A G A C T C T A G
p-value:1e-8
log p-value:-1.882e+01
Information Content per bp:1.658
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.24%
Number of Background Sequences with motif195.1
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets53.2 +/- 23.3bp
Average Position of motif in Background47.0 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---CATGGCAACG--
TACCATAGCAACGGT
 A C G T A C G T A C G T G A T C C T G A G A C T T A C G C A T G T G A C T C G A G T C A G A T C A C T G A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.80
Offset:-3
Orientation:forward strand
Alignment:---CATGGCAACG--
CCGCATAGCAACGGA
 A C G T A C G T A C G T G A T C C T G A G A C T T A C G C A T G T G A C T C G A G T C A G A T C A C T G A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.79
Offset:-5
Orientation:forward strand
Alignment:-----CATGGCAACG
GTTGCCATGGCAAC-
 A C G T A C G T A C G T A C G T A C G T G A T C C T G A G A C T T A C G C A T G T G A C T C G A G T C A G A T C A C T G
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----CATGGCAACG
TTGCCATGGCAACN
 A C G T A C G T A C G T A C G T G A T C C T G A G A C T T A C G C A T G T G A C T C G A G T C A G A T C A C T G
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

RFX2/MA0600.2/Jaspar

Match Rank:5
Score:0.74
Offset:-6
Orientation:reverse strand
Alignment:------CATGGCAACG
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C C T G A G A C T T A C G C A T G T G A C T C G A G T C A G A T C A C T G
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----CATGGCAACG
TTGCCATGGCAACC
 A C G T A C G T A C G T A C G T G A T C C T G A G A C T T A C G C A T G T G A C T C G A G T C A G A T C A C T G
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

RFX5/MA0510.2/Jaspar

Match Rank:7
Score:0.73
Offset:-6
Orientation:reverse strand
Alignment:------CATGGCAACG
NGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C C T G A G A C T T A C G C A T G T G A C T C G A G T C A G A T C A C T G
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G

RFX3/MA0798.1/Jaspar

Match Rank:8
Score:0.73
Offset:-6
Orientation:forward strand
Alignment:------CATGGCAACG
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C C T G A G A C T T A C G C A T G T G A C T C G A G T C A G A T C A C T G
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CATGGCAACG-
SCCTAGCAACAG
 A C G T G A T C C T G A G A C T T A C G C A T G T G A C T C G A G T C A G A T C A C T G A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0054.1_Rfx3_1/Jaspar

Match Rank:10
Score:0.72
Offset:-7
Orientation:forward strand
Alignment:-------CATGGCAACG------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C C T G A G A C T T A C G C A T G T G A C T C G A G T C A G A T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A