Information for 9-VAGGGGMWGYCCC (Motif 11)

T A G C C G T A C A T G A C T G T C A G C T A G G T A C C G T A A C T G A G C T A G T C A G T C G T A C
Reverse Opposite:
C A T G A C T G A C T G C T G A T G A C G C A T A C T G A G T C A G T C G T A C G T A C G C A T A T C G
p-value:1e-12
log p-value:-2.879e+01
Information Content per bp:1.691
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif2.94%
Number of Background Sequences with motif207.5
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets52.9 +/- 24.0bp
Average Position of motif in Background53.7 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFKB2/MA0778.1/Jaspar

Match Rank:1
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:VAGGGGMWGYCCC-
-AGGGGAATCCCCT
 T A G C C G T A C A T G A C T G T C A G C T A G G T A C C G T A A C T G A G C T A G T C A G T C G T A C A C G T
A C G T T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:2
Score:0.84
Offset:1
Orientation:forward strand
Alignment:VAGGGGMWGYCCC-
-AGGGGAATCCCCT
 T A G C C G T A C A T G A C T G T C A G C T A G G T A C C G T A A C T G A G C T A G T C A G T C G T A C A C G T
A C G T T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:3
Score:0.84
Offset:1
Orientation:forward strand
Alignment:VAGGGGMWGYCCC
-NGGGGATTTCCC
 T A G C C G T A C A T G A C T G T C A G C T A G G T A C C G T A A C T G A G C T A G T C A G T C G T A C
A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:4
Score:0.83
Offset:1
Orientation:forward strand
Alignment:VAGGGGMWGYCCC
-GGGGGAATCCCC
 T A G C C G T A C A T G A C T G T C A G C T A G G T A C C G T A A C T G A G C T A G T C A G T C G T A C
A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

MF0003.1_REL_class/Jaspar

Match Rank:5
Score:0.78
Offset:2
Orientation:forward strand
Alignment:VAGGGGMWGYCCC
--GGGGATTTCC-
 T A G C C G T A C A T G A C T G T C A G C T A G G T A C C G T A A C T G A G C T A G T C A G T C G T A C
A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T

REL/MA0101.1/Jaspar

Match Rank:6
Score:0.73
Offset:2
Orientation:forward strand
Alignment:VAGGGGMWGYCCC
--GGGGATTTCC-
 T A G C C G T A C A T G A C T G T C A G C T A G G T A C C G T A A C T G A G C T A G T C A G T C G T A C
A C G T A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T

RELA/MA0107.1/Jaspar

Match Rank:7
Score:0.71
Offset:2
Orientation:forward strand
Alignment:VAGGGGMWGYCCC
--GGGAATTTCC-
 T A G C C G T A C A T G A C T G T C A G C T A G G T A C C G T A A C T G A G C T A G T C A G T C G T A C
A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:VAGGGGMWGYCCC
--GGGAATTTCC-
 T A G C C G T A C A T G A C T G T C A G C T A G G T A C C G T A A C T G A G C T A G T C A G T C G T A C
A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-VAGGGGMWGYCCC--
NNNGGGGCGCCCCCNN
 A C G T T A G C C G T A C A T G A C T G T C A G C T A G G T A C C G T A A C T G A G C T A G T C A G T C G T A C A C G T A C G T
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A

MZF1/MA0056.1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:VAGGGGMWGYCCC
-TGGGGA------
 T A G C C G T A C A T G A C T G T C A G C T A G G T A C C G T A A C T G A G C T A G T C A G T C G T A C
A C G T A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T