Information for 7-CGGTTGCTAT (Motif 9)

A G T C C A T G A T C G C G A T C G A T A C T G A G T C G A C T T G C A A C G T
Reverse Opposite:
T G C A A C G T C T G A C T A G T G A C G C T A G C T A A T G C G T A C T C A G
p-value:1e-12
log p-value:-2.807e+01
Information Content per bp:1.676
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif4.32%
Number of Background Sequences with motif493.9
Percentage of Background Sequences with motif1.05%
Average Position of motif in Targets48.8 +/- 24.1bp
Average Position of motif in Background48.6 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-CGGTTGCTAT----
NCCGTTGCTANGNGN
 A C G T A G T C C A T G A T C G C G A T C G A T A C T G A G T C G A C T T G C A A C G T A C G T A C G T A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-CGGTTGCTAT----
NNCGTTGCTATGGNN
 A C G T A G T C C A T G A T C G C G A T C G A T A C T G A G T C G A C T T G C A A C G T A C G T A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:CGGTTGCTAT--
CTGTTGCTAGGS
 A G T C C A T G A T C G C G A T C G A T A C T G A G T C G A C T T G C A A C G T A C G T A C G T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.80
Offset:-5
Orientation:reverse strand
Alignment:-----CGGTTGCTAT--------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A G T C C A T G A T C G C G A T C G A T A C T G A G T C G A C T T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CGGTTGCTAT------
--GTTGCCATGGNAAC
 A G T C C A T G A T C G C G A T C G A T A C T G A G T C G A C T T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:6
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CGGTTGCTAT------
-KGTTGCTAGGMAACA
 A G T C C A T G A T C G C G A T C G A T A C T G A G T C G A C T T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CGGTTGCTAT-----
-GGTTGCCATGGCAA
 A G T C C A T G A T C G C G A T C G A T A C T G A G T C G A C T T G C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CGGTTGCTAT-----
-NGTTGCCATGGCAA
 A G T C C A T G A T C G C G A T C G A T A C T G A G T C G A C T T G C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CGGTTGCTAT------
CGGTTGCCATGGCAAC
 A G T C C A T G A T C G C G A T C G A T A C T G A G T C G A C T T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

RFX5/MA0510.2/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CGGTTGCTAT-------
-CGTTGCCATGGCAACG
 A G T C C A T G A T C G C G A T C G A T A C T G A G T C G A C T T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G