Information for 4-TTGGGAAATCCCC (Motif 3)

A G C T A G C T C T A G A C T G A T C G C T G A C G T A G T C A C A G T A T G C A G T C G T A C G T A C
Reverse Opposite:
A C T G A C T G A C T G A T C G G T C A A C G T A C G T A G C T A T G C A G T C A G T C C T G A T C G A
p-value:1e-13
log p-value:-3.167e+01
Information Content per bp:1.790
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.36%
Number of Background Sequences with motif21.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets53.4 +/- 25.1bp
Average Position of motif in Background47.2 +/- 20.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.87
Offset:2
Orientation:reverse strand
Alignment:TTGGGAAATCCCC-
--GGGAAATCCCCN
 A G C T A G C T C T A G A C T G A T C G C T G A C G T A G T C A C A G T A T G C A G T C G T A C G T A C A C G T
A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.84
Offset:3
Orientation:reverse strand
Alignment:TTGGGAAATCCCC
---GGAAATCCCC
 A G C T A G C T C T A G A C T G A T C G C T G A C G T A G T C A C A G T A T G C A G T C G T A C G T A C
A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.82
Offset:3
Orientation:reverse strand
Alignment:TTGGGAAATCCCC
---GGAAANCCCC
 A G C T A G C T C T A G A C T G A T C G C T G A C G T A G T C A C A G T A T G C A G T C G T A C G T A C
A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.80
Offset:3
Orientation:reverse strand
Alignment:TTGGGAAATCCCC
---GGAAATTCCC
 A G C T A G C T C T A G A C T G A T C G C T G A C G T A G T C A C A G T A T G C A G T C G T A C G T A C
A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

NFKB2/MA0778.1/Jaspar

Match Rank:5
Score:0.80
Offset:1
Orientation:forward strand
Alignment:TTGGGAAATCCCC-
-AGGGGATTCCCCT
 A G C T A G C T C T A G A C T G A T C G C T G A C G T A G T C A C A G T A T G C A G T C G T A C G T A C A C G T
A C G T T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.77
Offset:1
Orientation:forward strand
Alignment:TTGGGAAATCCCC
-GGGGGAATCCCC
 A G C T A G C T C T A G A C T G A T C G C T G A C G T A G T C A C A G T A T G C A G T C G T A C G T A C
A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.76
Offset:3
Orientation:forward strand
Alignment:TTGGGAAATCCCC
---GGAAATTCCC
 A G C T A G C T C T A G A C T G A T C G C T G A C G T A G T C A C A G T A T G C A G T C G T A C G T A C
A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:TTGGGAAATCCCC-
-AGGGGATTCCCCT
 A G C T A G C T C T A G A C T G A T C G C T G A C G T A G T C A C A G T A T G C A G T C G T A C G T A C A C G T
A C G T T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TTGGGAAATCCCC
CSTGGGAAAD----
 A C G T A G C T A G C T C T A G A C T G A T C G C T G A C G T A G T C A C A G T A T G C A G T C G T A C G T A C
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T A C G T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:10
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TTGGGAAATCCCC
NNNNTTGGGCACNNCN-
 A C G T A C G T A C G T A C G T A G C T A G C T C T A G A C T G A T C G C T G A C G T A G T C A C A G T A T G C A G T C G T A C G T A C
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C A C G T