Information for 2-RRATGTGCTGCTT (Motif 5)

C T A G T C A G C G T A A G C T A T C G A C G T A C T G A G T C C G A T C T A G A G T C C G A T A C G T
Reverse Opposite:
G T C A C G T A C T A G A G T C C G T A A C T G A G T C C G T A A T G C C T G A A C G T A G T C A G T C
p-value:1e-12
log p-value:-2.907e+01
Information Content per bp:1.728
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif10.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets52.6 +/- 20.3bp
Average Position of motif in Background29.6 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----RRATGTGCTGCTT
NNGCGTGTGTGCNGCN-
 A C G T A C G T A C G T A C G T C T A G T C A G C G T A A G C T A T C G A C G T A C T G A G T C C G A T C T A G A G T C C G A T A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:RRATGTGCTGCTT
RTACGTGC-----
 C T A G T C A G C G T A A G C T A T C G A C G T A C T G A G T C C G A T C T A G A G T C C G A T A C G T
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T A C G T A C G T A C G T

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:3
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------RRATGTGCTGCTT-
ACTYKNATTCGTGNTACTTC
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G C G T A A G C T A T C G A C G T A C T G A G T C C G A T C T A G A G T C C G A T A C G T A C G T
C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----RRATGTGCTGCTT
NNNNTTGTGTGCTTNN-
 A C G T A C G T A C G T A C G T C T A G T C A G C G T A A G C T A T C G A C G T A C T G A G T C C G A T C T A G A G T C C G A T A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:RRATGTGCTGCTT
GGACGTGC-----
 C T A G T C A G C G T A A G C T A T C G A C G T A C T G A G T C C G A T C T A G A G T C C G A T A C G T
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T A C G T A C G T

MAFK/MA0496.1/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:RRATGTGCTGCTT---
-AAANTGCTGACTNAG
 C T A G T C A G C G T A A G C T A T C G A C G T A C T G A G T C C G A T C T A G A G T C C G A T A C G T A C G T A C G T A C G T
A C G T C G T A C G T A C G T A G C A T C G A T A T C G G T A C A C G T A C T G C T G A A T G C G C A T G A T C C G T A C A T G

PB0026.1_Gm397_1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--RRATGTGCTGCTT--
NNGTATGTGCACATNNN
 A C G T A C G T C T A G T C A G C G T A A G C T A T C G A C G T A C T G A G T C C G A T C T A G A G T C C G A T A C G T A C G T A C G T
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

RUNX3/MA0684.1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:RRATGTGCTGCTT
---TTTGCGGTTT
 C T A G T C A G C G T A A G C T A T C G A C G T A C T G A G T C C G A T C T A G A G T C C G A T A C G T
A C G T A C G T A C G T C G A T A G C T A C G T T A C G A G T C A T C G A C T G A C G T A G C T C G A T

NRL/MA0842.1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:RRATGTGCTGCTT
-AATTTGCTGAC-
 C T A G T C A G C G T A A G C T A T C G A C G T A C T G A G T C C G A T C T A G A G T C C G A T A C G T
A C G T C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T

MAFF/MA0495.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-RRATGTGCTGCTT----
NAAAANTGCTGACTCAGC
 A C G T C T A G T C A G C G T A A G C T A T C G A C G T A C T G A G T C C G A T C T A G A G T C C G A T A C G T A C G T A C G T A C G T A C G T
C G T A C T G A C G T A C G T A C G T A G C A T G C A T C T A G G T A C C G A T A C T G C G T A A T G C G C A T G A T C C G T A C A T G T A G C