Information for 16-GCAGTAGCCAAGG (Motif 11)

A C T G G T A C C G T A A C T G C G A T C G T A A C T G A T G C A T G C C G T A C G T A C T A G C T A G
Reverse Opposite:
A G T C A G T C A C G T A C G T A T C G A T C G A G T C C G A T C G T A A G T C A C G T A C T G A G T C
p-value:1e-10
log p-value:-2.512e+01
Information Content per bp:1.866
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.4 +/- 27.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1/MA0509.1/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GCAGTAGCCAAGG----
---GTTGCCATGGNAAC
 A C T G G T A C C G T A A C T G C G A T C G T A A C T G A T G C A T G C C G T A C G T A C T A G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GCAGTAGCCAAGG
-CTGTTGCTAGGS
 A C T G G T A C C G T A A C T G C G A T C G T A A C T G A T G C A T G C C G T A C G T A C T A G C T A G
A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0051.1_Osr2_1/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GCAGTAGCCAAGG
ATGTACAGTAGCAAAG-
 A C G T A C G T A C G T A C G T A C T G G T A C C G T A A C T G C G A T C G T A A C T G A T G C A T G C C G T A C G T A C T A G C T A G
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GCAGTAGCCAAGG
ATTTACAGTAGCAAAA-
 A C G T A C G T A C G T A C G T A C T G G T A C C G T A A C T G C G A T C G T A A C T G A T G C A T G C C G T A C G T A C T A G C T A G
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCAGTAGCCAAGG--
NNCGTTGCTATGGNN
 A C T G G T A C C G T A A C T G C G A T C G T A A C T G A T G C A T G C C G T A C G T A C T A G C T A G A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GCAGTAGCCAAGG
---CGTGCCAAG-
 A C T G G T A C C G T A A C T G C G A T C G T A A C T G A T G C A T G C C G T A C G T A C T A G C T A G
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCAGTAGCCAAGG------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C T G G T A C C G T A A C T G C G A T C G T A A C T G A T G C A T G C C G T A C G T A C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GCAGTAGCCAAGG---
--NGTTGCCATGGCAA
 A C T G G T A C C G T A A C T G C G A T C G T A A C T G A T G C A T G C C G T A C G T A C T A G C T A G A C G T A C G T A C G T
A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GCAGTAGCCAAGG
-----TGCCAA--
 A C T G G T A C C G T A A C T G C G A T C G T A A C T G A T G C A T G C C G T A C G T A C T A G C T A G
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GCAGTAGCCAAGG
---GGTGCCAAGT
 A C T G G T A C C G T A A C T G C G A T C G T A A C T G A T G C A T G C C G T A C G T A C T A G C T A G
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T