Information for 2-GCCWCTAGTGGACAGS (Motif 2)

A C T G T G A C A T G C G C A T A G T C G C A T C T G A A C T G C G A T A C T G A T C G C T G A A G T C C G T A C T A G T A C G
Reverse Opposite:
A T C G A G T C A C G T A C T G G A C T A T G C A G T C C G T A A G T C A G C T C G T A A C T G C G T A A T C G A C T G A G T C
p-value:1e-22
log p-value:-5.142e+01
Information Content per bp:1.765
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.37%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.6 +/- 24.9bp
Average Position of motif in Background15.3 +/- 6.2bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GCCWCTAGTGGACAGS--
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C T G T G A C A T G C G C A T A G T C G C A T C T G A A C T G C G A T A C T G A T C G C T G A A G T C C G T A C T A G T A C G A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCCWCTAGTGGACAGS-
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C T G T G A C A T G C G C A T A G T C G C A T C T G A A C T G C G A T A C T G A T C G C T G A A G T C C G T A C T A G T A C G A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCCWCTAGTGGACAGS----
GCCASCAGGGGGCGCYVNNG
 A C T G T G A C A T G C G C A T A G T C G C A T C T G A A C T G C G A T A C T G A T C G C T G A A G T C C G T A C T A G T A C G A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:4
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----GCCWCTAGTGGACAGS
NNGAGGTTACTNNAGGTCA--
 A C G T A C G T A C G T A C G T A C G T A C T G T G A C A T G C G C A T A G T C G C A T C T G A A C T G C G A T A C T G A T C G C T G A A G T C C G T A C T A G T A C G
T G A C G T C A T C A G T C G A C A T G C A T G A G C T G A C T G C T A G A T C G A C T G A C T A G C T T C G A C T A G C A T G C A G T A G T C T C G A A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GCCWCTAGTGGACAGS---
--GGCGAGGGGTCAAGGGC
 A C T G T G A C A T G C G C A T A G T C G C A T C T G A A C T G C G A T A C T G A T C G C T G A A G T C C G T A C T A G T A C G A C G T A C G T A C G T
A C G T A C G T T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GCCWCTAGTGGACAGS
------AGRGGTCA--
 A C T G T G A C A T G C G C A T A G T C G C A T C T G A A C T G C G A T A C T G A T C G C T G A A G T C C G T A C T A G T A C G
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GCCWCTAGTGGACAGS
GGGTTACTANAGGTCA--
 A C G T A C G T A C T G T G A C A T G C G C A T A G T C G C A T C T G A A C T G C G A T A C T G A T C G C T G A A G T C C G T A C T A G T A C G
C T A G C A T G C A T G A G C T G A C T C G T A G A T C A G C T G T C A A T G C T C G A C T A G C A T G A C G T A G T C C T G A A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.54
Offset:10
Orientation:reverse strand
Alignment:GCCWCTAGTGGACAGS
----------CACAGN
 A C T G T G A C A T G C G C A T A G T C G C A T C T G A A C T G C G A T A C T G A T C G C T G A A G T C C G T A C T A G T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.53
Offset:6
Orientation:forward strand
Alignment:GCCWCTAGTGGACAGS
------TRAGGTCA--
 A C T G T G A C A T G C G C A T A G T C G C A T C T G A A C T G C G A T A C T G A T C G C T G A A G T C C G T A C T A G T A C G
A C G T A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GCCWCTAGTGGACAGS
--NTCAAGTGGN----
 A C T G T G A C A T G C G C A T A G T C G C A T C T G A A C T G C G A T A C T G A T C G C T G A A G T C C G T A C T A G T A C G
A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T A C G T