Information for 6-CTATTAAACG (Motif 12)

A G T C C G A T C G T A A C G T A C G T C G T A C G T A C G T A G A T C A C T G
Reverse Opposite:
G T A C C T A G A C G T A C G T A C G T C G T A C G T A A C G T C G T A A C T G
p-value:1e-8
log p-value:-2.007e+01
Information Content per bp:1.894
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif6.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.0 +/- 33.7bp
Average Position of motif in Background42.5 +/- 21.4bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.81
Offset:2
Orientation:forward strand
Alignment:CTATTAAACG
--ATTAAA--
 A G T C C G A T C G T A A C G T A C G T C G T A C G T A C G T A G A T C A C T G
A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:2
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--CTATTAAACG
NGCAATTAAA--
 A C G T A C G T A G T C C G A T C G T A A C G T A C G T C G T A C G T A C G T A G A T C A C T G
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T

Nkx2-5/MA0063.1/Jaspar

Match Rank:3
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CTATTAAACG
CAATTAA---
 A G T C C G A T C G T A A C G T A C G T C G T A C G T A C G T A G A T C A C T G
G T A C C G T A G T C A A C G T A C G T C T G A G C T A A C G T A C G T A C G T

GSX2/MA0893.1/Jaspar

Match Rank:4
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CTATTAAACG
ACTAATTAAA--
 A C G T A C G T A G T C C G A T C G T A A C G T A C G T C G T A C G T A C G T A G A T C A C T G
G T C A A T G C G A C T G T C A C G T A G C A T G C A T G C T A T C G A G T C A A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:5
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CTATTAAACG
GCAATAAAAA-
 A C G T A G T C C G A T C G T A A C G T A C G T C G T A C G T A C G T A G A T C A C T G
T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:6
Score:0.73
Offset:2
Orientation:forward strand
Alignment:CTATTAAACG--
--GCTAAACGGT
 A G T C C G A T C G T A A C G T A C G T C G T A C G T A C G T A G A T C A C T G A C G T A C G T
A C G T A C G T T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T

BARX1/MA0875.1/Jaspar

Match Rank:7
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CTATTAAACG
GCAATTAG---
 A C G T A G T C C G A T C G T A A C G T A C G T C G T A C G T A C G T A G A T C A C T G
T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:8
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CTATTAAACG
CTAATTAA---
 A C G T A G T C C G A T C G T A A C G T A C G T C G T A C G T A C G T A G A T C A C T G
A T G C G A C T G T C A G C T A C G A T G C A T C T G A G C T A A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:9
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CTATTAAACG
CCAATAAAAC-
 A C G T A G T C C G A T C G T A A C G T A C G T C G T A C G T A C G T A G A T C A C T G
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T

BSX/MA0876.1/Jaspar

Match Rank:10
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CTATTAAACG
CCAATTAA---
 A C G T A G T C C G A T C G T A A C G T A C G T C G T A C G T A C G T A G A T C A C T G
T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A A C G T A C G T A C G T