Information for 5-TCTRCTGCCA (Motif 4)

A C G T G T A C A C G T C T A G A T G C G C A T A C T G A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G C G T A
p-value:1e-12
log p-value:-2.924e+01
Information Content per bp:1.874
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.41%
Number of Background Sequences with motif133.8
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets39.0 +/- 27.3bp
Average Position of motif in Background53.4 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.69
Offset:5
Orientation:reverse strand
Alignment:TCTRCTGCCA-
-----TGCCAA
 A C G T G T A C A C G T C T A G A T G C G C A T A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.69
Offset:3
Orientation:forward strand
Alignment:TCTRCTGCCA--
---CGTGCCAAG
 A C G T G T A C A C G T C T A G A T G C G C A T A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.67
Offset:4
Orientation:forward strand
Alignment:TCTRCTGCCA--
----TTGCCAAG
 A C G T G T A C A C G T C T A G A T G C G C A T A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TCTRCTGCCA---
---GGTGCCAAGT
 A C G T G T A C A C G T C T A G A T G C G C A T A C T G A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Myb/MA0100.2/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TCTRCTGCCA
CCAACTGCCA
 A C G T G T A C A C G T C T A G A T G C G C A T A C T G A G T C A G T C C G T A
A G T C G A T C C G T A C T G A A G T C C G A T A C T G G A T C G T A C G C T A

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.62
Offset:4
Orientation:forward strand
Alignment:TCTRCTGCCA---
----ATGCCAACC
 A C G T G T A C A C G T C T A G A T G C G C A T A C T G A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

THAP1/MA0597.1/Jaspar

Match Rank:7
Score:0.61
Offset:4
Orientation:forward strand
Alignment:TCTRCTGCCA---
----CTGCCCGCA
 A C G T G T A C A C G T C T A G A T G C G C A T A C T G A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

E2F8/MA0865.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TCTRCTGCCA--
TTTCCCGCCAAA
 A C G T G T A C A C G T C T A G A T G C G C A T A C T G A G T C A G T C C G T A A C G T A C G T
G A C T A G C T A C G T A G T C A G T C A T G C T A C G A G T C T A G C C T G A C G T A G C T A

E2F7/MA0758.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TCTRCTGCCA---
TTTTCCCGCCAAAA
 A C G T A C G T G T A C A C G T C T A G A T G C G C A T A C T G A G T C A G T C C G T A A C G T A C G T A C G T
C G A T C G A T A G C T A G C T A T G C A T G C A G T C T C A G A G T C A T G C C G T A C G T A G C T A C G T A

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TCTRCTGCCA-
---GCTGTCAA
 A C G T G T A C A C G T C T A G A T G C G C A T A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A