Information for 4-GTGGAGCGGATTG (Motif 2)

A C T G A C G T A C T G A C T G C G T A A C T G G T A C A C T G A C T G C T G A C G A T A C G T A C T G
Reverse Opposite:
A G T C C G T A G C T A A G C T A G T C A G T C C A T G A G T C A C G T A G T C A G T C C G T A A G T C
p-value:1e-13
log p-value:-3.091e+01
Information Content per bp:1.935
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets36.3 +/- 25.8bp
Average Position of motif in Background49.5 +/- 13.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF354C/MA0130.1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GTGGAGCGGATTG
GTGGAT-------
 A C T G A C G T A C T G A C T G C G T A A C T G G T A C A C T G A C T G C T G A C G A T A C G T A C T G
A T C G A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0202.1_Zfp410_2/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GTGGAGCGGATTG-
NNTNNGGGGCGGNGNGN
 A C G T A C G T A C G T A C T G A C G T A C T G A C T G C G T A A C T G G T A C A C T G A C T G C T G A C G A T A C G T A C T G A C G T
C G T A C T G A C A G T C G A T G C A T T A C G A C T G T A C G A C T G T G A C T C A G C T A G C T A G C T A G C A G T C T A G T C G A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GTGGAGCGGATTG
BTBRAGTGSN---
 A C T G A C G T A C T G A C T G C G T A A C T G G T A C A C T G A C T G C T G A C G A T A C G T A C T G
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T

Dmbx1/MA0883.1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTGGAGCGGATTG-----
-TGAACCGGATTAATGAA
 A C T G A C G T A C T G A C T G C G T A A C T G G T A C A C T G A C T G C T G A C G A T A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTGGAGCGGATTG-----
-TGAACCGGATTAATGAA
 A C T G A C G T A C T G A C T G C G T A A C T G G T A C A C T G A C T G C T G A C G A T A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GTGGAGCGGATTG-
--NNTGTGGATTSS
 A C T G A C G T A C T G A C T G C G T A A C T G G T A C A C T G A C T G C T G A C G A T A C G T A C T G A C G T
A C G T A C G T C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GTGGAGCGGATTG
-CGGAGC------
 A C T G A C G T A C T G A C T G C G T A A C T G G T A C A C T G A C T G C T G A C G A T A C G T A C T G
A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GTGGAGCGGATTG
CTTGAGTGGCT--
 A C T G A C G T A C T G A C T G C G T A A C T G G T A C A C T G A C T G C T G A C G A T A C G T A C T G
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:9
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GTGGAGCGGATTG-
---AAGAGGATTAG
 A C T G A C G T A C T G A C T G C G T A A C T G G T A C A C T G A C T G C T G A C G A T A C G T A C T G A C G T
A C G T A C G T A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

PH0129.1_Otx1/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GTGGAGCGGATTG------
--AGAGGGGATTAATTTAT
 A C T G A C G T A C T G A C T G C G T A A C T G G T A C A C T G A C T G C T G A C G A T A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T