Information for 5-CTGCCACGTA (Motif 18)

A G T C C G A T A C T G A G T C A G T C C G T A G T A C A C T G A G C T C T G A
Reverse Opposite:
A G C T C T G A T G A C C A T G A C G T A C T G T C A G A G T C C G T A A C T G
p-value:1e-7
log p-value:-1.764e+01
Information Content per bp:1.850
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.81%
Number of Background Sequences with motif132.1
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets46.7 +/- 27.9bp
Average Position of motif in Background53.6 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CREB3L1/MA0839.1/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CTGCCACGTA----
ATGCCACGTCATCA
 A G T C C G A T A C T G A G T C A G T C C G T A G T A C A C T G A G C T C T G A A C G T A C G T A C G T A C G T
T C G A G A C T C T A G G T A C G A T C C T G A A T G C T C A G C G A T T G A C C T G A A G C T G A T C C T G A

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:2
Score:0.70
Offset:3
Orientation:forward strand
Alignment:CTGCCACGTA---
---GCACGTACCC
 A G T C C G A T A C T G A G T C A G T C C G T A G T A C A C T G A G C T C T G A A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:CTGCCACGTA
--BGCACGTA
 A G T C C G A T A C T G A G T C A G T C C G T A G T A C A C T G A G C T C T G A
A C G T A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A

Creb3l2/MA0608.1/Jaspar

Match Rank:4
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CTGCCACGTA-
--GCCACGTGT
 A G T C C G A T A C T G A G T C A G T C C G T A G T A C A C T G A G C T C T G A A C G T
A C G T A C G T A C T G G T A C A T G C C G T A A G T C A C T G A C G T A T C G C A G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CTGCCACGTA
VGCTGWCAVB--
 A C G T A C G T A G T C C G A T A C T G A G T C A G T C C G T A G T A C A C T G A G C T C T G A
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTGCCACGTA
TTGCCAAG--
 A G T C C G A T A C T G A G T C A G T C C G T A G T A C A C T G A G C T C T G A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:7
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CTGCCACGTA-
---GCACGTAY
 A G T C C G A T A C T G A G T C A G T C C G T A G T A C A C T G A G C T C T G A A C G T
A C G T A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:8
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CTGCCACGTA-
---GCACGTNC
 A G T C C G A T A C T G A G T C A G T C C G T A G T A C A C T G A G C T C T G A A C G T
A C G T A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

CREB3/MA0638.1/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CTGCCACGTA----
GTGCCACGTCATCA
 A G T C C G A T A C T G A G T C A G T C C G T A G T A C A C T G A G C T C T G A A C G T A C G T A C G T A C G T
T C A G A G C T C A T G G T A C A T G C C G T A A G T C C T A G G A C T T G A C C T G A A G C T G T A C T C G A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CTGCCACGTA
-TGTCANYT-
 A G T C C G A T A C T G A G T C A G T C C G T A G T A C A C T G A G C T C T G A
A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T