Information for 6-TCACATATTT (Motif 4)

G A C T A G T C C G T A G T A C C G T A A G C T G T C A G C A T A C G T C G A T
Reverse Opposite:
C G T A C G T A C G T A A C G T C T G A C G A T C A T G C G A T C T A G C T G A
p-value:1e-9
log p-value:-2.143e+01
Information Content per bp:1.791
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.17%
Number of Background Sequences with motif163.7
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets47.2 +/- 31.1bp
Average Position of motif in Background50.4 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TCACATATTT-----
-CTAATATTGCTAAA
 G A C T A G T C C G T A G T A C C G T A A G C T G T C A G C A T A C G T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TCACATATTT-----
-CTAATATTGCTAAA
 G A C T A G T C C G T A G T A C C G T A A G C T G T C A G C A T A C G T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

TBX21/MA0690.1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TCACATATTT
TTCACACCTT-
 A C G T G A C T A G T C C G T A G T A C C G T A A G C T G T C A G C A T A C G T C G A T
C G A T A G C T T G A C C T G A G T A C T C G A T G A C G A T C G A C T G A C T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TCACATATTT
TTMACACCTT-
 A C G T G A C T A G T C C G T A G T A C C G T A A G C T G T C A G C A T A C G T C G A T
C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T A C G T

PH0009.1_Bsx/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TCACATATTT-----
NTNAGNTAATTACCTN
 A C G T G A C T A G T C C G T A G T A C C G T A A G C T G T C A G C A T A C G T C G A T A C G T A C G T A C G T A C G T A C G T
G A T C G A C T A T C G T C G A C T A G A T C G G A C T T G C A G T C A A C G T A C G T C T G A G T A C G A T C A C G T A C T G

EOMES/MA0800.1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TCACATATTT
NTTTTCACACCTT-
 A C G T A C G T A C G T A C G T G A C T A G T C C G T A G T A C C G T A A G C T G T C A G C A T A C G T C G A T
C T G A G C A T C A G T C G A T A G C T T G A C C T G A A G T C T C G A T G A C G A T C G A C T G A C T A C G T

Dlx1/MA0879.1/Jaspar

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TCACATATTT---
---NNTAATTANN
 G A C T A G T C C G T A G T A C C G T A A G C T G T C A G C A T A C G T C G A T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G T G C A C G A T T G C A G C T A C G A T A C G T C T G A A C T G A C T G

MF0010.1_Homeobox_class/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TCACATATTT
---AATAATT
 G A C T A G T C C G T A G T A C C G T A A G C T G T C A G C A T A C G T C G A T
A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T

FOXC1/MA0032.2/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:TCACATATTT-----
----ATATTTACATA
 G A C T A G T C C G T A G T A C C G T A A G C T G T C A G C A T A C G T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A

PB0177.1_Sox7_2/Jaspar

Match Rank:10
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------TCACATATTT-----
NNCNNNCNCANACAATTAGNAC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A G T C C G T A G T A C C G T A A G C T G T C A G C A T A C G T C G A T A C G T A C G T A C G T A C G T A C G T
T C G A A T C G T G A C C A T G A G C T G T C A A G T C C G T A A T G C C T G A A T G C C G T A A G T C C G T A C G T A G C A T C A G T G C T A T A C G A T G C G C T A T G A C