Information for 3-AGGGGGCGCTGTTTGC (Motif 3)

G T C A A C T G T C A G T C A G C T A G A T C G G A T C A C T G A G T C C G A T T A C G A C G T A C G T G A C T A C T G A G T C
Reverse Opposite:
C T A G T A G C C T G A T G C A C G T A A G T C C G T A A C T G G T A C C T A G T A G C G A T C A G T C A G T C A G T C A C G T
p-value:1e-21
log p-value:-4.947e+01
Information Content per bp:1.716
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.1 +/- 17.9bp
Average Position of motif in Background20.9 +/- 7.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------AGGGGGCGCTGTTTGC
GCCASCAGGGGGCGCYVNNG--
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C T G T C A G T C A G C T A G A T C G G A T C A C T G A G T C C G A T T A C G A C G T A C G T G A C T A C T G A G T C
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.57
Offset:-8
Orientation:forward strand
Alignment:--------AGGGGGCGCTGTTTGC
TGGCCACCAGGGGGCGCTA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C T G T C A G T C A G C T A G A T C G G A T C A C T G A G T C C G A T T A C G A C G T A C G T G A C T A C T G A G T C
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T A C G T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.57
Offset:-8
Orientation:reverse strand
Alignment:--------AGGGGGCGCTGTTTGC
TGGCCACCAGGTGGCACTNT----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C T G T C A G T C A G C T A G A T C G G A T C A C T G A G T C C G A T T A C G A C G T A C G T G A C T A C T G A G T C
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T A C G T A C G T A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----AGGGGGCGCTGTTTGC
NNNAAGGGGGCGGGNNN---
 A C G T A C G T A C G T A C G T G T C A A C T G T C A G T C A G C T A G A T C G G A T C A C T G A G T C C G A T T A C G A C G T A C G T G A C T A C T G A G T C
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGGGGGCGCTGTTTGC
AGGVNCCTTTGT----
 G T C A A C T G T C A G T C A G C T A G A T C G G A T C A C T G A G T C C G A T T A C G A C G T A C G T G A C T A C T G A G T C
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T A C G T

PB0009.1_E2F3_1/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AGGGGGCGCTGTTTGC
ATAAGGGCGCGCGAT----
 A C G T A C G T A C G T G T C A A C T G T C A G T C A G C T A G A T C G G A T C A C T G A G T C C G A T T A C G A C G T A C G T G A C T A C T G A G T C
T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.55
Offset:7
Orientation:forward strand
Alignment:AGGGGGCGCTGTTTGC
-------GCTGTG---
 G T C A A C T G T C A G T C A G C T A G A T C G G A T C A C T G A G T C C G A T T A C G A C G T A C G T G A C T A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AGGGGGCGCTGTTTGC
AGATGCTRCTRCCHT-
 G T C A A C T G T C A G T C A G C T A G A T C G G A T C A C T G A G T C C G A T T A C G A C G T A C G T G A C T A C T G A G T C
C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--AGGGGGCGCTGTTTGC
NNNNTGAGCACTGTNNG-
 A C G T A C G T G T C A A C T G T C A G T C A G C T A G A T C G G A T C A C T G A G T C C G A T T A C G A C G T A C G T G A C T A C T G A G T C
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G A C G T

INSM1/MA0155.1/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----AGGGGGCGCTGTTTGC
TGTCAGGGGGCG--------
 A C G T A C G T A C G T A C G T G T C A A C T G T C A G T C A G C T A G A T C G G A T C A C T G A G T C C G A T T A C G A C G T A C G T G A C T A C T G A G T C
C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T